Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00143 ATGAAGCTAGAAAACTCCTCCAACTCCAACGGCCAGATGTCCTTCGCCGGTGACGTTTCGCCGCCGCATCATAACGCTGACGATGCAGAGGAGATATTTGTGCCGCCGCTGAATTTCGCGATGGTTGACAATGGCATTTTTAGGTCAGGCTTTCCAGATGCTGCCAACTTCGGATTCTTGAAATCCCTTCGTCTCCGTTCTGTAATATGTTTGTGCCCTGAACCGTATCCAGAAACGACTGCGGAGTTTTTGAAGGTCAACGGAATAAGGCTTTATCAATTTGGGATCGATGGCTGTAAGGAACCCTTTGTCAACATCCCGGACAATACAATTCGTGAAGCTTTGAAAGTAGCTCTCGATGTTAGGAACCACCCTCTGCTGATTCATTGTAAACGAGGGAAGTTTGGTGATTTTACAATGAACAGCACCGCACTGGTTGTCTTGTGGGATGCATAA 456 0.4715 MKLENSSNSNGQMSFAGDVSPPHHNADDAEEIFVPPLNFAMVDNGIFRSGFPDAANFGFLKSLRLRSVICLCPEPYPETTAEFLKVNGIRLYQFGIDGCKEPFVNIPDNTIREALKVALDVRNHPLLIHCKRGKFGDFTMNSTALVVLWDA. 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00143 151 Gene3D Protein tyrosine phosphatase superfamily 32 136 IPR029021 -
Seca12g00143 151 PANTHER TYROSINE-PROTEIN PHOSPHATASE 31 134 - -
Seca12g00143 151 MobiDBLite consensus disorder prediction 1 22 - -
Seca12g00143 151 MobiDBLite consensus disorder prediction 1 16 - -
Seca12g00143 151 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 33 134 IPR029021 -
Seca12g00143 151 PRINTS Plant and fungal dual specificity phosphatase signature 70 83 IPR020428 GO:0016791
Seca12g00143 151 PRINTS Plant and fungal dual specificity phosphatase signature 33 50 IPR020428 GO:0016791
Seca12g00143 151 PRINTS Plant and fungal dual specificity phosphatase signature 106 120 IPR020428 GO:0016791
Seca12g00143 151 PRINTS Plant and fungal dual specificity phosphatase signature 89 103 IPR020428 GO:0016791
Seca12g00143 151 Pfam Tyrosine phosphatase family 34 135 IPR004861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00143 Seca-Chr12 1338091 1341812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00143 14 134 Protein tyrosine phosphatase (PTP) family AT4G03960 64.286 3.95e-55 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00143 K18045 - gmx:100785520 227.254