LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g00128	ATGTCTGTCACCGAAACCCCCGGTCTCCAACACCGTCACCCGTCGAAGCGAAAATTCGACGATGAGGAAGAAGATGTCTCTGACCTAGTTTGTGTCAGAATGAGGAAGGAAGAGGCCAAGGTGGTTAACTCGTGGTCTTCGGGTTGCGGTGGCGAGTTACAAAGATCGCACTTGCAATTCTTCGTTCGAATGATGTCAGGAGGTAACACTATTGTTATGCAGGCTTATCCGGAAGAAACCGTCAAATCTATTCACGAACGCATTCAGATTATGAAAGGAATTCCCCTTTTCGAGCAGAGGTTAATTTACAGGGGAAAACAGCTTCAGTGGGAACAGACTCTCGCTGAGTGTTCCATCCAAAACGACGCCAACCTTCAACTCGTGGGTCGTATGCGCAGCACCGAACACCCTCAGGCGTGGCAGGTAATTAACGACATGATTTCTCACGTTTATCGTCTCTGTCGCGGGGAAACTGTTCACGATGCTTTGAAGACCATTAAGGGCCTCATCTCCAGTTACCTCAACATGACACCCAGAAACGACAACGATTCTGCCACTGGGTATTTTCAGATTTTCATGTCTTCATCTGCCCCTGCTGTGCTGGTCATGCTCTATGTCTCCCCCTATCCAGGTAACAAAACCTGTGCTGATTCTTCTGTTAGACATTTCTTGAATTCTTGTCGTAATACCTTGCCCAAGGCACTGCACACCCAGTGTGCTTGTGTGGTCTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGTTCTCACGACCCTTTGTATCTCTTTTGTCGGAGTACTTTTGGGTCCTTGTTGGAAACTGCTGGTATTTCCTATGCTGCTTCTGAGAGTGAAAATGTTAAAGGATCAATTTTGATTCAAGATATTTTCCCCTTTGTGCGTGAGCTTGCTAATAGCTTGTTGTCGGATTTGGATTTGAGTATGGAGACCCCCTCCGTTGCTGGGTCTTTGTTCATCGACGTTGGGGATTTTACTGCCTTCTTAATCCCTTTGAGGACTGGAATCAGGGAGCAACGAGCTCTCCAAGATTCTATGACATACCAGCAGCGCCATAAGGACTTGTTGCTCGTTGAAGAGATTGAATACCTTCATCTCTTGTACATTGAGTTATTGAACAAAATTGATCAGTGCCTTTCAAAATTGGAGAAAAGTTTGGCTGCCCAGGAAATGATGCAAGGGGATAATCTTTGTCCTGCATGGTCTCAGTATCTTTCCATTTTGAAGGAGTTGTATCAAATTTCTAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGAGTGTTTTGATGCGTCAAAAGAATGTGCTGTGTCAACTCATCGTTCAATATGCAAAGAGGACTGATGAGCATCAGTGGATTCTTGAGCACAGGTCTGTCACGAATTTTGAGTCTAGGAGGCATTTGGCAATGATGATGTTCCCAGAGGTAAAAGAAGATTATGAGGACCTGCATGAGATGCTTATTGACAGGTCTCACTTACTGACTGAATCTTTTGAATACATAGCACGAGCTGAGCCCGAATCTCTGCATGCTGGCTTATTTATGGAATTCAAAAATGAGGAAGCCACTGGCCCAGGTGTACTGAGGGAGTGGTTTGTTTTGGTATGTCAAGCACTATTCAATCCACAAAATGCTCTTTTTGTGGCATGCCCAACTGATCAAAGGAGATTTTTCCCTAATCCTGCTTCAAAGGTACATCCTCTGCACCTTGAGTACTTCAACTTCTCTGGTCGAGTTATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCTGGAAATTATATTACCTTAGAAGATATAAAGGATGCAGATCCTTGCCTTTATACTAGCTGCAAGCAAATATTGGAGATGGATTCTGGTTTCATTGATTCAGATGCATTAGGACTGACGTTTGTTAGAGAGGTTGAGGAATTAGGACACAGGAAAGTGGTTGAACTCTGCCCTGGTGGGAAAAACATTGTAGTAAATAGTAAGAACAGGGGGAAGTATGTTGATCTTCTTATACAGGATCGTTTTGTAACATCCACATCTGAGCAAGTGTCACATTTTGCCAAAGGTTTTGCTGATATTCTTTCAAACTCAAAGCTCCAGCAGTTCTTCTTTCAAAGTTTAGAGCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAGATACCATTTCTGTTGAAGATTGGAAAGCACACACCGAGTATAATGGCTATAAAGAGACAGATGTTCAGATAACTTGGTTTTGGGAGGTATGTACATAG	2301	0.4337	MSVTETPGLQHRHPSKRKFDDEEEDVSDLVCVRMRKEEAKVVNSWSSGCGGELQRSHLQFFVRMMSGGNTIVMQAYPEETVKSIHERIQIMKGIPLFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQVINDMISHVYRLCRGETVHDALKTIKGLISSYLNMTPRNDNDSATGYFQIFMSSSAPAVLVMLYVSPYPGNKTCADSSVRHFLNSCRNTLPKALHTQCACVVLEFCKLLRRVGSHDPLYLFCRSTFGSLLETAGISYAASESENVKGSILIQDIFPFVRELANSLLSDLDLSMETPSVAGSLFIDVGDFTAFLIPLRTGIREQRALQDSMTYQQRHKDLLLVEEIEYLHLLYIELLNKIDQCLSKLEKSLAAQEMMQGDNLCPAWSQYLSILKELYQISKLYDGAEEKLWSVLMRQKNVLCQLIVQYAKRTDEHQWILEHRSVTNFESRRHLAMMMFPEVKEDYEDLHEMLIDRSHLLTESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFVLVCQALFNPQNALFVACPTDQRRFFPNPASKVHPLHLEYFNFSGRVIALALMHRVQVGIVFDRVFFLQLAGNYITLEDIKDADPCLYTSCKQILEMDSGFIDSDALGLTFVREVEELGHRKVVELCPGGKNIVVNSKNRGKYVDLLIQDRFVTSTSEQVSHFAKGFADILSNSKLQQFFFQSLELEDLDWMLHGSEDTISVEDWKAHTEYNGYKETDVQITWFWEVCT.	767

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g00128	766	ProSiteProfiles	HECT domain profile.	510	766	IPR000569	GO:0004842
	Seca12g00128	766	Gene3D	-	52	148	-	-
	Seca12g00128	766	Gene3D	Hect, E3 ligase catalytic domains	492	723	-	-
	Seca12g00128	766	PANTHER	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	59	764	-	-
	Seca12g00128	766	SMART	ubq_7	58	130	IPR000626	GO:0005515
	Seca12g00128	766	FunFam	E3 ubiquitin-protein ligase UPL5 isoform A	52	146	-	-
	Seca12g00128	766	SUPERFAMILY	Hect, E3 ligase catalytic domain	485	765	IPR035983	GO:0004842
	Seca12g00128	766	FunFam	E3 ubiquitin-protein ligase UPL5 isoform A	610	692	-	-
	Seca12g00128	766	Gene3D	Hect, E3 ligase catalytic domain	610	692	-	-
	Seca12g00128	766	MobiDBLite	consensus disorder prediction	1	21	-	-
	Seca12g00128	766	Pfam	Ubiquitin family	61	132	IPR000626	GO:0005515
	Seca12g00128	766	SMART	hect_3	508	765	IPR000569	GO:0004842
	Seca12g00128	766	PRINTS	Ubiquitin signature	90	110	IPR019956	-
	Seca12g00128	766	PRINTS	Ubiquitin signature	69	89	IPR019956	-
	Seca12g00128	766	PRINTS	Ubiquitin signature	111	132	IPR019956	-
	Seca12g00128	766	Pfam	HECT-domain (ubiquitin-transferase)	539	764	IPR000569	GO:0004842
	Seca12g00128	766	SUPERFAMILY	Ubiquitin-like	59	146	IPR029071	-
	Seca12g00128	766	Gene3D	Hect, E3 ligase catalytic domain	733	766	-	-
	Seca12g00128	766	ProSiteProfiles	Ubiquitin domain profile.	58	134	IPR000626	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g00128	Seca-Chr12	1214067	1219292	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca12g00128	58	132	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	40.000	1.30e-11	60.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g00128	-		-	gmx:100796470	1287.71