Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00116 ATGCGAACCATACGCTCCAATTTGTTCCAACACTCTGATTCCCACACCTTGACCAATACCCTCATCGACCTCGCCTCCCGAAACAACAAACCCCTTAAAGTCGATGAACAACTTCTAGAACTTTCTCAAGCTTTCAGCGATTTCTCCGCTTGCAGCAGCGATATCTCCGGCGAGCTCCAGAGGCTGGCCACCGTCTCTTCCTCCGAAAACAACCACTCTGCCGCTGCTGACGTGGACCACCAACTCCAGCCCGAGCCTTGCCTAGGCTTCACCGAGATTATTGAAACTATTTCACCCGAGGATCTTCAGCCGACGGTCTCGATCTGCGTCGACGGTCTCCAATCGCCGTCGATCTCCGTGAAGCGATCGGCGGCAGCCAAGCTGAGGCTGTTGGCCAAGAACCGGGCGGATAACCGTGCTCTGATCGGCGAGTCCGGTGCCATTCCTGCTTTGGTTCCGCTGCTCCGGTGCAGTGATCCGTGGACGCAGGAACACGCCGTGACGGCATTGCTGAATCTGTCTCTGCTCGAAGACAACAAGGTGCTGATAACGAACGCAGGTGCTGTGAAGTCACTTGTTTATGTGCTCAAAACGGGGACGGAGACTTCAAAGCAGAACGCGGCTTGTGCGCTTTTGAGCCTTGCCGTGGTGGAGGAAAACAAGAGCTCCATCGGTGCTTGTGGGGCTATACCACCGCTTGTTTCGTTGCTGTTGAGTGGTTCCAGCAGGGGGAAGAAAGATGCACTCACCACGCTTTACAAGCTGTGTTCGGTGAAGCAGAACAAGGAGAGGGCGGTGAGCGCTGGAGTGGTGAAGCCACTGGTGGAGCTGGTGGCGGAGGAAGGGACTGGTATGGCTGATAAGGCAATGGTGGTGCTGAATAGCTTGGCGGGGATTCAAGAGGGAAGGGAAGCAATTGTGGAACAGGGTGGAATAGCTGCTCTTGTTGAAGCCATTGAAGATGGGTCGGTGAAGGGAAAGGAATTTGCTGTTTTGACTCTTGTGCAGCTATGTGCTGATAGCGTCAGGAACAGAGGAATGCTTGTGAGGGAAGGTGGGATTCCTCCTCTCGTTGCTCTCTCCCAGACTGGGACTGTTCGAGCTAAGCACAAGGTCAGTTTCTAG 1125 0.5449 MRTIRSNLFQHSDSHTLTNTLIDLASRNNKPLKVDEQLLELSQAFSDFSACSSDISGELQRLATVSSSENNHSAAADVDHQLQPEPCLGFTEIIETISPEDLQPTVSICVDGLQSPSISVKRSAAAKLRLLAKNRADNRALIGESGAIPALVPLLRCSDPWTQEHAVTALLNLSLLEDNKVLITNAGAVKSLVYVLKTGTETSKQNAACALLSLAVVEENKSSIGACGAIPPLVSLLLSGSSRGKKDALTTLYKLCSVKQNKERAVSAGVVKPLVELVAEEGTGMADKAMVVLNSLAGIQEGREAIVEQGGIAALVEAIEDGSVKGKEFAVLTLVQLCADSVRNRGMLVREGGIPPLVALSQTGTVRAKHKVSF. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00116 374 SMART arm_5 217 257 IPR000225 GO:0005515
Seca12g00116 374 SMART arm_5 135 175 IPR000225 GO:0005515
Seca12g00116 374 SMART arm_5 176 216 IPR000225 GO:0005515
Seca12g00116 374 SMART arm_5 299 339 IPR000225 GO:0005515
Seca12g00116 374 Gene3D - 46 372 IPR011989 -
Seca12g00116 374 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 188 IPR000225 GO:0005515
Seca12g00116 374 FunFam RING-type E3 ubiquitin transferase 95 374 - -
Seca12g00116 374 SUPERFAMILY ARM repeat 102 370 IPR016024 -
Seca12g00116 374 PANTHER U BOX DOMAIN-CONTAINING 79 371 - -
Seca12g00116 374 Pfam Armadillo/beta-catenin-like repeat 219 257 IPR000225 GO:0005515
Seca12g00116 374 Pfam Armadillo/beta-catenin-like repeat 137 174 IPR000225 GO:0005515
Seca12g00116 374 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 269 311 IPR000225 GO:0005515
Seca12g00116 374 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 228 270 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00116 Seca-Chr12 1109108 1110232 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00116 101 371 U-box Gene Family AT2G23140 50.554 5.43e-77 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00116 - - gmx:100792402 559.296