Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00112 ATGCAAATGTCTCAGAAGCACCCAAGTTCAGCTGGTATCCACTTCTATCACCCTCACCAGCCTGTGCAAGGCATTTACCAAGTATTACAAAGCAAAAGATGCCGTGATACCCATGGTAGTAGCAGCCGGGGAACTAATGTTTCTTTTGAAACCTGCAAGGAGCAATACTTCACCCTGGAATCATGCCCATCAGTCACTGGTTTCATGGAATGTGATTCCCCTTCCTATGGCAGCGTATCATCTAACAGGAGTCCATTCTCTTCACAAGATTCTCAGTCATGGAATTCAGATCACCACCAGTCATCTGACAACACCTGTGGATCACCAATTAGTGGGTTGTCAAGTGTTGATGATGGGAATGAATTGAAGCACAAACTTAGAGAACTGGAGATTTCACTGTTGGGGCCTGATGAATCAGATATTGTTGACAGTTGTGGCTGCTGTGTCGAGGGTGGCCTCCACCGAGCATCTCCACCAGCAAAATATGATTGGGATCGGATTGCAGAAAATATTTCAAAGCTTGACTTGAAAGAAGTCCTCATGCTATGTGCACAGGCTGTGTCTGATGAAGATATTCCAACAGCAAGAGGCTGGATGGATAATGTATTGGTGAAGATGGTATCAGTTGCTGGAGATCCATACCAAAGGTTGGGTGCTTACTTGTTGGAGGGACTTAGAGCAAGGTTGGAATCATCAGGGAGTCTGATCTACAAGACCTTGAAGTGTGAACAACCAACAAGCCAAGAACTAATGAGTTACATGCACATCCTGTATCAGATTTGTCCATATTGGAAGTTTGCATACGTATCTGCAAACGCCGTCATTGCAGAAGCAATGGCAAATGAATCCAGGATTCATATAATTGATTTCCAAATTACACAGGGCACTCAGTGGCATTTACTTATCCAGGCTCTTGCACACAGGCCTGGTGGACCCCCTTTTGTCCGAATAACCGGTGTTGATGATTCCCAATCATTTCACGCTCGGGGTGGAGGACTTGAGATTGTAGGAGCACGGCTTTCAGATTTTGCCAGGTCTTGCGGGGTTCCATTTGAGTTCCATTGTGCTGCAATGTCTGGCTGTGAGGTTCAACGAGAAAATCTTGGAGTTAGACCAGGGGAAGCTCTGGCTGTAAATTTTCCTTTTGTTTTGCATCACATGCCAGATGAGAGTGTGAGCATAGATAATCATAGAGACAGACTGTTGAGATTGGTTAAGAGCTTGTCTCCAAAGGTTGTTACCCTTGTTGAGCAAGAATCCAACACCAACACTTCACCTTTTTTTCACAGGTTTGTTGAGACCCTGGATTATTATACAGCTATGTTTGAATCAATAGATGTGGCTTGCCCCAGAGATGATAAGAAGCGGATTAGTGCAGAACAGCACTGTGTGGCAAGAGACATTGTCAACATGATAGCCTGTGAGGGGATTGAGAGGGTGGAAAGGCATGAACTTTTTGGAAAGTGGAGGTTAAGATTTTCCATGGCTGGATTTAAACAATGCCCATTGAGTTCTTCAGTGATGGCTGCTGCCCAAAATCTCTTGAAGGACTTCAATAAAAACTATAGGCTTGAACAGAGAGATGGTGCTCTCTGCCTTGGTTGGATGAAGAGAGCTATGGCCACCTCTTCTGCTTGGAGGTGA 1644 0.4483 MQMSQKHPSSAGIHFYHPHQPVQGIYQVLQSKRCRDTHGSSSRGTNVSFETCKEQYFTLESCPSVTGFMECDSPSYGSVSSNRSPFSSQDSQSWNSDHHQSSDNTCGSPISGLSSVDDGNELKHKLRELEISLLGPDESDIVDSCGCCVEGGLHRASPPAKYDWDRIAENISKLDLKEVLMLCAQAVSDEDIPTARGWMDNVLVKMVSVAGDPYQRLGAYLLEGLRARLESSGSLIYKTLKCEQPTSQELMSYMHILYQICPYWKFAYVSANAVIAEAMANESRIHIIDFQITQGTQWHLLIQALAHRPGGPPFVRITGVDDSQSFHARGGGLEIVGARLSDFARSCGVPFEFHCAAMSGCEVQRENLGVRPGEALAVNFPFVLHHMPDESVSIDNHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFHRFVETLDYYTAMFESIDVACPRDDKKRISAEQHCVARDIVNMIACEGIERVERHELFGKWRLRFSMAGFKQCPLSSSVMAAAQNLLKDFNKNYRLEQRDGALCLGWMKRAMATSSAWR. 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00112 547 MobiDBLite consensus disorder prediction 79 110 - -
Seca12g00112 547 Coils Coil 508 528 - -
Seca12g00112 547 ProSiteProfiles GRAS family profile. 167 547 IPR005202 -
Seca12g00112 547 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 111 540 IPR005202 -
Seca12g00112 547 Pfam GRAS domain family 176 547 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00112 Seca-Chr12 1085791 1089390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00112 1 547 GRAS Transcription Factor Family AT4G17230 59.307 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca12g00112 GRAS 4.1e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00112 - - gmx:100776109 911.368