Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00099 ATGGGTATTGATGAAGCTCAGCAGTCATTACTTTCAGAGTCAAGAGATCATCCTCATCTCCATGAGAAGAGTGATCTCCAGAGAAGAAGACCCCGCCGTGGCAGTGCTTCAGAGACAGAGATCAATATTCAAGAACAAAATGATGTCCAAAACCCTTCACAGAATCAATGTATAGCTGCAAAACTACAAGCAGAGTTCTACTTCAAGCCAGTGTTCTTGTGGTTAGTTGCCTACCTAGGTGGAGGTACCTTATGTTTCTTTCTCACAAGATATCAGATCCAAGGTATAAAAACCAATGGATTTCTTGATTCCCTTTATTTCTGTGTTGTGACAATGACTACTGTTGGATATGGAGATCTTGTTCCCAATAGCCCATTGTCAAAATTTCTTGCTTGCATTTATGTGTTCACTGGCATGGCTCTTGTTGGGTTAATTCTTAGCAAGGCAGCTGATTACATTGTTGAAAAGCAGGAAATGTTACTAGTTAGAGCCATGTCTAAGGGTGGAAAAGTTAGTTCTGAAGAGCTTTCCAAAGAGCTTGGTAGTAACAAAAGCAAATATAAATTTGTGCTGGCAGCATCCACTTTTTTTGTGCTTATGGTTGTAGGAACTATGTTTCTGTATTTTATTGAAAAACTAGATTTTGTGGATGCCCTCTATTGTGTTTGTTCCACAGTCACTACTTTAGGTTATGGGGATAAGAGCTTCTCAACTACATTTGGTCGTACTTTTGCTGTGTTTTGGATATTGAGCAGTACTATTTGCTTAGCTCAGTCTTTTGCCTATCTTGCTGAACTATATACTGAAGATAGACAAAGATCATTGGTGAAAATGGTTCTTACAAGAAAATTGTCACGCATGGATCTTGAGGCAGCAGATCTTGATGGAGACAGAGCTGTCAGTGCTGCAGAGTTCGTTGTGTACAAGTTGAAGGAAATGGAAAAGATCAGCCAAGAAGATATTTCAGTGGTGATGGAGATTTTTAGAAAACTAGATTGTGATAAATCTGGAACTCTGACAGAAGCTGATCTTAGAAATTCTGAATCCTCTTAA 1053 0.3894 MGIDEAQQSLLSESRDHPHLHEKSDLQRRRPRRGSASETEINIQEQNDVQNPSQNQCIAAKLQAEFYFKPVFLWLVAYLGGGTLCFFLTRYQIQGIKTNGFLDSLYFCVVTMTTVGYGDLVPNSPLSKFLACIYVFTGMALVGLILSKAADYIVEKQEMLLVRAMSKGGKVSSEELSKELGSNKSKYKFVLAASTFFVLMVVGTMFLYFIEKLDFVDALYCVCSTVTTLGYGDKSFSTTFGRTFAVFWILSSTICLAQSFAYLAELYTEDRQRSLVKMVLTRKLSRMDLEAADLDGDRAVSAAEFVVYKLKEMEKISQEDISVVMEIFRKLDCDKSGTLTEADLRNSESS. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00099 350 MobiDBLite consensus disorder prediction 1 37 - -
Seca12g00099 350 Gene3D - 284 347 - -
Seca12g00099 350 Gene3D - 53 174 - -
Seca12g00099 350 Gene3D - 175 276 - -
Seca12g00099 350 PRINTS Two pore domain K+ channel signature 227 236 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca12g00099 350 PRINTS Two pore domain K+ channel signature 110 138 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca12g00099 350 SUPERFAMILY Voltage-gated potassium channels 181 284 - -
Seca12g00099 350 SUPERFAMILY Voltage-gated potassium channels 65 155 - -
Seca12g00099 350 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 99 322 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca12g00099 350 SUPERFAMILY EF-hand 287 346 IPR011992 -
Seca12g00099 350 ProSitePatterns EF-hand calcium-binding domain. 332 344 IPR018247 -
Seca12g00099 350 MobiDBLite consensus disorder prediction 10 36 - -
Seca12g00099 350 Pfam Ion channel 74 154 IPR013099 -
Seca12g00099 350 Pfam Ion channel 197 267 IPR013099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00099 Seca-Chr12 1008564 1010995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00099 68 344 Ion Channels AT5G55630 59.928 1.10e-114 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00099 K05389 - gmx:100799492 530.791