Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00094 ATGCATGCCCCGAGTCATTCCTGGATGCAAACTACTTCAGGGTATGAAGATATGTACAGTGAACTCGGAATTCCAACAATGATTACTTGGAGTAATGGTGGAAAAGAAGTAGCTGTGGAGGGATCATGGGATAATTGGAAAACAAGAACACCCTTGCAGAGATCAGGGAAAGACTTCACAATAATGAAGGTACTTCCATCTGGTGTTTACCAGTACAGATTCATCGTGGATGGGCAGTGGAGGTACGCTCCAGACTTGCCTTGGGCCCAAGATGATGCTGGGAATGCTTACAACATCTTGGACTTACAGGATTATGTTCCTGAAGACATTGGAAGCATTTCTAGTTTTGAACATCCTCAATCACCAGACTCGAGTTATAACAACTTACAACTTAGTTCTGAAGATTATGCGAAGGAGCCACCATTAGCTCCTCCACACTTGCAAAAGACACTGTTAAATGTACCTACAACGAATTTGGAAATCCAACCTCCTATGTCAAGACCACAACATGGAGTGCTCAATCATCTTTACATGCAGAAAGGAAAAAGCAGTCCTTCGGTGGTTGCCCTTGGTACAACTCATCGGTTTCTAGCCAAATATGTGACTATGGTGCTGTACAAGTCTTTGAAGGGGTAA 636 0.4324 MHAPSHSWMQTTSGYEDMYSELGIPTMITWSNGGKEVAVEGSWDNWKTRTPLQRSGKDFTIMKVLPSGVYQYRFIVDGQWRYAPDLPWAQDDAGNAYNILDLQDYVPEDIGSISSFEHPQSPDSSYNNLQLSSEDYAKEPPLAPPHLQKTLLNVPTTNLEIQPPMSRPQHGVLNHLYMQKGKSSPSVVALGTTHRFLAKYVTMVLYKSLKG. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00094 211 Gene3D - 112 209 - -
Seca12g00094 211 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 137 207 IPR006828 GO:0005515
Seca12g00094 211 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 210 IPR043554 -
Seca12g00094 211 SUPERFAMILY E set domains 24 109 IPR014756 -
Seca12g00094 211 CDD E_set_AMPKbeta_like_N 25 101 - -
Seca12g00094 211 SUPERFAMILY AMPKBI-like 106 208 IPR037256 -
Seca12g00094 211 SMART AMPKBI_2 119 209 IPR006828 GO:0005515
Seca12g00094 211 Pfam Glycogen recognition site of AMP-activated protein kinase 24 103 IPR032640 -
Seca12g00094 211 Gene3D Immunoglobulins 19 106 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00094 Seca-Chr12 952655 956256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00094 34 104 Protein tyrosine phosphatase (PTP) family AT3G01510 34.667 3.22e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00094 K07199 - gmx:100777497 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00094 12 952655 956256 Seca6g04351 6 111155207 111157907 PCT