Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00091 ATGGCTGAATCTGACAACGAGTCAGGAGGTAACCGCAATGAAAGAGAAGGAGGTGGGTGCAGAGAACAGGACAGGCTCCTTCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCTTTACCAGCAAACGCAAAGATCTCAAAGGAAGCAAAAGAGACGATGCAAGAGTGTGTATCAGAGTTCATAAGCTTCATAACAGGGGAGGCATCTGACAAGTGCCAGAAAGAGAAGAGGAAGACAATCAACGGTGATGATCTTCTATGGGCTATGACCACGCTGGGGTTTGAAGAGTATGTGGAGCCTCTCAAGGTTTACCTCCAAAAGTATAGGGAATTGGAAGGAGAGAAGAATAATGCTATCATTGGGAGTGGGAGGCAGCAGGGTGGTGATGCTTCGTCAATGCCATCATCATCCACTATGATCATGACGGATCACCTTATGTATGCATCTGCTAATGTCTGGAAGAATTAA 471 0.465 MAESDNESGGNRNEREGGGCREQDRLLPIANVSRIMKKALPANAKISKEAKETMQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYRELEGEKNNAIIGSGRQQGGDASSMPSSSTMIMTDHLMYASANVWKN. 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00091 156 FunFam Nuclear transcription factor Y subunit B-3 15 139 - -
Seca12g00091 156 Gene3D Histone, subunit A 16 144 IPR009072 GO:0046982
Seca12g00091 156 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 126 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca12g00091 156 MobiDBLite consensus disorder prediction 1 23 - -
Seca12g00091 156 MobiDBLite consensus disorder prediction 8 22 - -
Seca12g00091 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
Seca12g00091 156 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Seca12g00091 156 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Seca12g00091 156 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Seca12g00091 156 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca12g00091 156 SUPERFAMILY Histone-fold 23 124 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00091 Seca-Chr12 933114 933584 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00091 1 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 80.469 2.27e-70 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca12g00091 CBFD_NFYB_HMF 6.7e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00091 K08065 - gmx:100778034 207.994