Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00088 ATGAACATGAGGCAGCAGATAGGAGGAGGAGGAGGAGATCAGAACAACCAATCAGAGGATCAGAATGAGTGCATGGTGAGGGAGCAAGACCGTTTCATGCCAATTGCAAATGTGATTAGGATAATGCGCAAGATCCTACCGCCACATGCCAAGATCTCTGATGATGCTAAAGAAACAATCCAAGAGTGTGTCTCTGAGTACATCAGCTTCATCACTGGTGAGGCCAATGAGCGTTGTCAGAGGGAGCAGCGCAAGACCATCACTGCAGAGGATGTCCTGTGGGCTATGAGCAAGCTTGGCTTTGATGATTACATTGAACCTCTCACAATGTACCTTCACCGATACCGTGAGCTGGAGGGTGACCGTACCTCCATGAGGGCTGAACCACTTGGGAAGAGGACTGTTGAGTATGGAACTCTTGGGGTTGCTACTGCAGCTGCTTTTGTCCCACCATTTCATCATCATCATCACCACATTGGCCATCCAAATGGGTATTTTGGTGCAGCCATGGGGACTTACATGAGGGACAATGCACCAAATAATGCTGCTGCTGCTGCAGGGTCATCTCAGGCTGCACTCACAAATGCTGAACCAAATGGTCAATATAAATGA 612 0.4853 MNMRQQIGGGGGDQNNQSEDQNECMVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRAEPLGKRTVEYGTLGVATAAAFVPPFHHHHHHIGHPNGYFGAAMGTYMRDNAPNNAAAAAGSSQAALTNAEPNGQYK. 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00088 203 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 176 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca12g00088 203 MobiDBLite consensus disorder prediction 1 22 - -
Seca12g00088 203 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Seca12g00088 203 SUPERFAMILY Histone-fold 29 126 IPR009072 GO:0046982
Seca12g00088 203 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca12g00088 203 FunFam Nuclear transcription factor Y subunit B-6 21 137 - -
Seca12g00088 203 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Seca12g00088 203 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Seca12g00088 203 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Seca12g00088 203 Gene3D Histone, subunit A 19 137 IPR009072 GO:0046982
Seca12g00088 203 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00088 Seca-Chr12 906235 906846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00088 13 165 CCAAT-HAP3 Transcription Factor Family AT5G47670 67.485 4.22e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca12g00088 CBFD_NFYB_HMF 5.3e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00088 K08065 - gmx:100800011 266.929