Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00082 ATGGACATCATGGAGTCCCACGACCACTACGGCAACAGCAGCACCGGGGTGAGTGAGATAGAGGAAGAGGACTGCGACGACACCCACCACCGCCATGATGAGCCTCCAATGGCCACCATATGTGAAGAAGACTCTGTTTATGTAGCAGTTGGTAAGAGTGAGACAAGTATGGAAGCTCTGTTATGGACACTCAACAACTTGACGAATCACTCTACCATTCTTTATCTCATACATGTATTCCCAGAGATCAAGCACATTCCAAATCCATTGGGAGCAGGGATGATTCCAAGGGATAAAGTGAGTGCTGAGCAGGTGGAGAGTTATGTGGCCGAAGAAAGAGGCAAGAGGAGAGACCTCCTCCAGAAGTTTCTCCAATCATGCTCTACCTCCAAGGTTAAGGCAGACACCATCCTGATTGAGAGTGACTTAGTTGCAAAGGCTATTATTGACCTCATTCCCATTCTTCAAATAAGAAATTTAGTGATCGGAACCAACAAATTCTATCTAAGAAAATCAAGATCAAAGAAAGGGAATGGCATAGCTGATCAGGTACTGCAGAATGCGCCAGAAAATTGCAAGGTGAGAATTATATGTGAAGGGAAGGAAGTCAATGAGCATATGCAATTGTTGTCACCCCCTCCACAGGTGCTTACCCCTCGCACCTCTGCTAATGACACTTCCATCAGGGAGCATGACGAGTGCTTGCACCACGATTCCGATGAAGAAAGCTCCAGTTGGAGTTGCGGTTTAATTGGACCCAAGAGGAACCAAGTCTTTGATTCAGAGTCAGAGTCAGAGGAGCTGTTTGAGATCAATCTGAATTTGAAGGAGAAGGAGCCTCCTTTGGATACAATAAGAGAAGATTGCGAGAGCACCGTGTTCTCTCTTGATATTAATCACAAAGATAAAGATGTCGTTTATGTGGCAGTGGGCGACGGTGGAGATTCAAGCATGGAAGCGCTTTCATGGGCCTTGAACCACGCCGTAACACCCTCTACCACCGTTTGCCTCATACACGTTTTCCCTCGAGTCAAGCTCATTCCTAGTCCATTGGGAAAAATTCCAAGGAGCCACGTAAATCTAGAGTATGTCAACATCTACTTGAACCAAGAGAAAGGCAAGAGGAAATCGCTACTTCAAAAGTTCACTGACCTATGCATTGATTCAAAGGTTAAGGTGGAGATGATGCTTATTGAGGGTGACATTGTTGCTAAAGCCATCGTGGACCTTGTCGGGAATCTGAATATAAGGAAATTGGTAATTGGAACCACCAAATCTAATTTAAGAAAATCTGGGCCTAGAAGACAAAATGCCATAGCCGACATGGTACTAAAAAATGCGCAAGAAAGCTGTGATATTAAAATCATATGCGAAGGAAGAGAAGTGATCGACCAGATGATTGGCTGCACTTCACAGCGCTCGACAGACGATAGTAGTTCCAGATCACATGAAGAACATGAATCCCTTTCTTTTGTCCCACTTAAGTGTTTTATGCCCAATCCTTTATTATGGTTATTTAGGTCCAGATTTTTATGA 1536 0.4427 MDIMESHDHYGNSSTGVSEIEEEDCDDTHHRHDEPPMATICEEDSVYVAVGKSETSMEALLWTLNNLTNHSTILYLIHVFPEIKHIPNPLGAGMIPRDKVSAEQVESYVAEERGKRRDLLQKFLQSCSTSKVKADTILIESDLVAKAIIDLIPILQIRNLVIGTNKFYLRKSRSKKGNGIADQVLQNAPENCKVRIICEGKEVNEHMQLLSPPPQVLTPRTSANDTSIREHDECLHHDSDEESSSWSCGLIGPKRNQVFDSESESEELFEINLNLKEKEPPLDTIREDCESTVFSLDINHKDKDVVYVAVGDGGDSSMEALSWALNHAVTPSTTVCLIHVFPRVKLIPSPLGKIPRSHVNLEYVNIYLNQEKGKRKSLLQKFTDLCIDSKVKVEMMLIEGDIVAKAIVDLVGNLNIRKLVIGTTKSNLRKSGPRRQNAIADMVLKNAQESCDIKIICEGREVIDQMIGCTSQRSTDDSSSRSHEEHESLSFVPLKCFMPNPLLWLFRSRFL. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00082 511 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 311 427 - -
Seca12g00082 511 Gene3D HUPs 44 197 IPR014729 -
Seca12g00082 511 Gene3D HUPs 306 448 IPR014729 -
Seca12g00082 511 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 45 166 - -
Seca12g00082 511 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 260 499 - -
Seca12g00082 511 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00082 Seca-Chr12 841965 852397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00082 309 480 Plant U-box Gene Family AT5G57035 32.203 1.55e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00082 - - gmx:100799795 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00082 12 841965 852397 Seca6g04334 6 111029232 111035237 PCT