Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g00081 | ATGAAACGCTCAGGCGATGACGTGGCTGTAACCGCAACGAAGCCAGTGTTCCTAACCAAAGCCCAGCGCGAGCAGTTGGCCCTTCAACGCCGTCACGAAGAAATCGCCGAGCAGAAGCGCCGCCAGGAACAGCTCCTTTCTGGTAACCGCCCTTCTGATCCCAAACCCTCCTCTGAATCCGACCGCCGCGACCGAGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGACAGGGAAAGAGAACGCGACCGCGACCGCGACAGGGCCCGCGAAACCGAACGGCGTAACCGAGAGAGGGAGCGCGAAGAAGAGAGTAAAGCTCGCGAGCGTGCTCGCTTGGAGAAATTGGCGGAGCGGGAGCGCGAGAAAGAGCTGGATGCCATCAAGGAGCAGTACCTTGGGTCCAAGAAGCCTAAGAAACGGGTTATCAAGCCTAGCGAGAAGTTTCGCTTCTCGTTCGATTGGGAAAACACCGAGGACACGTCCCGCGACATGAATTCCCTTTACCAGAACCCTCACGAGGCTCAGCTTCTGTTTGGCCGAGGGTTCCGCGCGGGGATGGACCGCCGCGAGCAGAAGAAGCTGGCTGCCAAGAACGAGAAGGAGATGCGAGAGCAAATCCGGAAGAAGGACGGCGTGGAGGAGAAGCCGGAGGAGGCGGATGCGCAGCGGCGGAAGGAGGCTGCTGCTGATCTGTACGACACCTTTGATATGAGGGTGGACCGCCACTGGAGTGAGAAGAAGCTGGAAGAGATGACGGAGAGGGATTGGCGTATCTTCAGGGAGGACTTCAACATCTCCTACAAGGGTTCCAAGATTCCTCGCCCCATGCGTAGCTGGATTGAGAGCAAGTTGAGCAATGAGCTCTTGAAGGCTGTGGAGAAGGCTGGTTACAAGACCCCATCTCCCATTCAGATGGCAGCTATTCCCCTTGGCTTGCAGCAGCGCGATGTAATTGGCATTGCTGAGACTGGTTCCGGGAAGACTGCTGCATTTGTTCTTCCCATGTTGAGTTACATCACTAGGCTTCCTCCCATGAGTGAGGAGAACGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCACCCACTCGTGAGCTTGCGCAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCAGTATCTGGGCATCAAAGTGGTTTCCATTGTTGGTGGACAGTCCATTGAGGAGCAAGGGTTTAAGATAAGGCAAGGCTGTGAAATTGTGATTGCCACTCCGGGTCGTTTGATTGATTGCTTGGAGCGACGCTATGCTGTTCTCAACCAGTGCAATTATGTTGTTCTTGATGAGGCTGACCGTATGATTGATATGGGGTTTGAGCCACAGGTTATGGGTGTGCTGGATGCCATGCCTTCCAGCAATCTGAAACCTGAGAATGAAGATGAGGAGCTTGACGAGAAGAAGATTTACAGGACCACTTATATGTTTAGTGCCACCATGCCACCCGCTGTGGAGAGGCTTGCTAGGAAATATTTAAGGAACCCTGTTGTGGTAACCATAGGTACTGCTGGAAAAGCAACTGACTTGATCAGCCAGCATGTCAACATGATGAAGGAATCTGAGAAATTTCCTAAGCTTCAGAGATTGCTTGATGAGCTTAATGACAAGACTGCAATTGTATTCGTTAACACCAAGAAGAATGCTGATATGGTTGCCAAAAATTTAGATAAGGAAGGCTATCGTGTGACTACTTTGCATGGAGGGAAATCGCAGGAGCAGAGGGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTTCTTGTAGCAACTGATGTTGCTGGACGTGGGATTGACATACCTGATGTGGCTCATGTAATCAACTATGATATGCCTGGGAATATTGAAATGTACACTCACCGTATTGGGCGTACTGGTCGTGCAGGAAAGACAGGTGTGGCTACAACCTTCCTGACTCTTCATGACACTGATGTCTTTTATGACCTCAAACAGATGCTCATTCAAAGTAATAGTCCTGTTCCACCTGAATTGGCAAGGCATGAAGCTTCAAAATTCAAACCAGGAACTATTCCCGACAGACCACCTAGACGTAATGACACTGTTTTTGCGCATTAG | 2148 | 0.5084 | MKRSGDDVAVTATKPVFLTKAQREQLALQRRHEEIAEQKRRQEQLLSGNRPSDPKPSSESDRRDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRERERDRDRDRARETERRNREREREEESKARERARLEKLAEREREKELDAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKDGVEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWIESKLSNELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVNMMKESEKFPKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH. | 716 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g00081 | 715 | MobiDBLite | consensus disorder prediction | 208 | 243 | - | - | |
Seca12g00081 | 715 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 548 | 692 | IPR001650 | - | |
Seca12g00081 | 715 | MobiDBLite | consensus disorder prediction | 683 | 715 | - | - | |
Seca12g00081 | 715 | Coils | Coil | 99 | 143 | - | - | |
Seca12g00081 | 715 | Gene3D | - | 256 | 525 | IPR027417 | - | |
Seca12g00081 | 715 | Pfam | Helicase conserved C-terminal domain | 545 | 653 | IPR001650 | - | |
Seca12g00081 | 715 | SMART | ultradead3 | 314 | 536 | IPR014001 | - | |
Seca12g00081 | 715 | CDD | DEADc_DDX23 | 306 | 522 | - | - | |
Seca12g00081 | 715 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 295 | 323 | IPR014014 | GO:0003724 | |
Seca12g00081 | 715 | Coils | Coil | 539 | 559 | - | - | |
Seca12g00081 | 715 | Coils | Coil | 207 | 233 | - | - | |
Seca12g00081 | 715 | Coils | Coil | 18 | 38 | - | - | |
Seca12g00081 | 715 | CDD | SF2_C_DEAD | 533 | 662 | - | - | |
Seca12g00081 | 715 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 371 | 674 | IPR027417 | - | |
Seca12g00081 | 715 | MobiDBLite | consensus disorder prediction | 25 | 46 | - | - | |
Seca12g00081 | 715 | MobiDBLite | consensus disorder prediction | 55 | 154 | - | - | |
Seca12g00081 | 715 | Gene3D | - | 526 | 713 | IPR027417 | - | |
Seca12g00081 | 715 | SMART | helicmild6 | 572 | 653 | IPR001650 | - | |
Seca12g00081 | 715 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 450 | 458 | IPR000629 | - | |
Seca12g00081 | 715 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 326 | 521 | IPR014001 | - | |
Seca12g00081 | 715 | MobiDBLite | consensus disorder prediction | 25 | 158 | - | - | |
Seca12g00081 | 715 | Pfam | DEAD/DEAH box helicase | 320 | 510 | IPR011545 | GO:0003676|GO:0005524 | |
Seca12g00081 | 715 | FunFam | probable ATP-dependent RNA helicase DDX23 | 256 | 525 | - | - | |
Seca12g00081 | 715 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 230 | 692 | - | - | |
Seca12g00081 | 715 | MobiDBLite | consensus disorder prediction | 690 | 715 | - | - | |
Seca12g00081 | 715 | FunFam | probable ATP-dependent RNA helicase DDX23 | 526 | 714 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g00081 | Seca-Chr12 | 838880 | 841027 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g00081 | 302 | 702 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 33.582 | 1.50e-61 | 210 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g00081 | K12858 | - | gmx:100792810 | 1131.32 |