Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00081 ATGAAACGCTCAGGCGATGACGTGGCTGTAACCGCAACGAAGCCAGTGTTCCTAACCAAAGCCCAGCGCGAGCAGTTGGCCCTTCAACGCCGTCACGAAGAAATCGCCGAGCAGAAGCGCCGCCAGGAACAGCTCCTTTCTGGTAACCGCCCTTCTGATCCCAAACCCTCCTCTGAATCCGACCGCCGCGACCGAGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGACAGGGAAAGAGAACGCGACCGCGACCGCGACAGGGCCCGCGAAACCGAACGGCGTAACCGAGAGAGGGAGCGCGAAGAAGAGAGTAAAGCTCGCGAGCGTGCTCGCTTGGAGAAATTGGCGGAGCGGGAGCGCGAGAAAGAGCTGGATGCCATCAAGGAGCAGTACCTTGGGTCCAAGAAGCCTAAGAAACGGGTTATCAAGCCTAGCGAGAAGTTTCGCTTCTCGTTCGATTGGGAAAACACCGAGGACACGTCCCGCGACATGAATTCCCTTTACCAGAACCCTCACGAGGCTCAGCTTCTGTTTGGCCGAGGGTTCCGCGCGGGGATGGACCGCCGCGAGCAGAAGAAGCTGGCTGCCAAGAACGAGAAGGAGATGCGAGAGCAAATCCGGAAGAAGGACGGCGTGGAGGAGAAGCCGGAGGAGGCGGATGCGCAGCGGCGGAAGGAGGCTGCTGCTGATCTGTACGACACCTTTGATATGAGGGTGGACCGCCACTGGAGTGAGAAGAAGCTGGAAGAGATGACGGAGAGGGATTGGCGTATCTTCAGGGAGGACTTCAACATCTCCTACAAGGGTTCCAAGATTCCTCGCCCCATGCGTAGCTGGATTGAGAGCAAGTTGAGCAATGAGCTCTTGAAGGCTGTGGAGAAGGCTGGTTACAAGACCCCATCTCCCATTCAGATGGCAGCTATTCCCCTTGGCTTGCAGCAGCGCGATGTAATTGGCATTGCTGAGACTGGTTCCGGGAAGACTGCTGCATTTGTTCTTCCCATGTTGAGTTACATCACTAGGCTTCCTCCCATGAGTGAGGAGAACGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCACCCACTCGTGAGCTTGCGCAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCAGTATCTGGGCATCAAAGTGGTTTCCATTGTTGGTGGACAGTCCATTGAGGAGCAAGGGTTTAAGATAAGGCAAGGCTGTGAAATTGTGATTGCCACTCCGGGTCGTTTGATTGATTGCTTGGAGCGACGCTATGCTGTTCTCAACCAGTGCAATTATGTTGTTCTTGATGAGGCTGACCGTATGATTGATATGGGGTTTGAGCCACAGGTTATGGGTGTGCTGGATGCCATGCCTTCCAGCAATCTGAAACCTGAGAATGAAGATGAGGAGCTTGACGAGAAGAAGATTTACAGGACCACTTATATGTTTAGTGCCACCATGCCACCCGCTGTGGAGAGGCTTGCTAGGAAATATTTAAGGAACCCTGTTGTGGTAACCATAGGTACTGCTGGAAAAGCAACTGACTTGATCAGCCAGCATGTCAACATGATGAAGGAATCTGAGAAATTTCCTAAGCTTCAGAGATTGCTTGATGAGCTTAATGACAAGACTGCAATTGTATTCGTTAACACCAAGAAGAATGCTGATATGGTTGCCAAAAATTTAGATAAGGAAGGCTATCGTGTGACTACTTTGCATGGAGGGAAATCGCAGGAGCAGAGGGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTTCTTGTAGCAACTGATGTTGCTGGACGTGGGATTGACATACCTGATGTGGCTCATGTAATCAACTATGATATGCCTGGGAATATTGAAATGTACACTCACCGTATTGGGCGTACTGGTCGTGCAGGAAAGACAGGTGTGGCTACAACCTTCCTGACTCTTCATGACACTGATGTCTTTTATGACCTCAAACAGATGCTCATTCAAAGTAATAGTCCTGTTCCACCTGAATTGGCAAGGCATGAAGCTTCAAAATTCAAACCAGGAACTATTCCCGACAGACCACCTAGACGTAATGACACTGTTTTTGCGCATTAG 2148 0.5084 MKRSGDDVAVTATKPVFLTKAQREQLALQRRHEEIAEQKRRQEQLLSGNRPSDPKPSSESDRRDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRERERDRDRDRARETERRNREREREEESKARERARLEKLAEREREKELDAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKDGVEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWIESKLSNELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVNMMKESEKFPKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH. 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00081 715 MobiDBLite consensus disorder prediction 208 243 - -
Seca12g00081 715 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 548 692 IPR001650 -
Seca12g00081 715 MobiDBLite consensus disorder prediction 683 715 - -
Seca12g00081 715 Coils Coil 99 143 - -
Seca12g00081 715 Gene3D - 256 525 IPR027417 -
Seca12g00081 715 Pfam Helicase conserved C-terminal domain 545 653 IPR001650 -
Seca12g00081 715 SMART ultradead3 314 536 IPR014001 -
Seca12g00081 715 CDD DEADc_DDX23 306 522 - -
Seca12g00081 715 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 295 323 IPR014014 GO:0003724
Seca12g00081 715 Coils Coil 539 559 - -
Seca12g00081 715 Coils Coil 207 233 - -
Seca12g00081 715 Coils Coil 18 38 - -
Seca12g00081 715 CDD SF2_C_DEAD 533 662 - -
Seca12g00081 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 674 IPR027417 -
Seca12g00081 715 MobiDBLite consensus disorder prediction 25 46 - -
Seca12g00081 715 MobiDBLite consensus disorder prediction 55 154 - -
Seca12g00081 715 Gene3D - 526 713 IPR027417 -
Seca12g00081 715 SMART helicmild6 572 653 IPR001650 -
Seca12g00081 715 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 450 458 IPR000629 -
Seca12g00081 715 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 326 521 IPR014001 -
Seca12g00081 715 MobiDBLite consensus disorder prediction 25 158 - -
Seca12g00081 715 Pfam DEAD/DEAH box helicase 320 510 IPR011545 GO:0003676|GO:0005524
Seca12g00081 715 FunFam probable ATP-dependent RNA helicase DDX23 256 525 - -
Seca12g00081 715 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 230 692 - -
Seca12g00081 715 MobiDBLite consensus disorder prediction 690 715 - -
Seca12g00081 715 FunFam probable ATP-dependent RNA helicase DDX23 526 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00081 Seca-Chr12 838880 841027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00081 302 702 Eukaryotic Initiation Factors Gene Family AT3G13920 33.582 1.50e-61 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00081 K12858 - gmx:100792810 1131.32