Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00068 ATGCATCAGCCGAAGAATTTTCCTAGTTCAAGTATAGTTGGAAGTAACTCATTAGTTCATGATCAGCATATGGATTGTGGTGGCACTAGCAGCACAATGGATCCTGTCAATGTGGGGAGCACTCTCACCAACAACCCTGGTCTCGCTTCCAAGCAGCGTTTACGCTGGACGAATGAACTACATGAACGTTTTGTTGATGCTGTGGCACAACTTGGCGGCCCAGATCGTGCCACACCTAAAGGTTTCCTGAGAGTTATGGGTGTACCGAGCTTAACAATATACCATGTCAAAAGCCATTTACAGAAATATCGACTAGCAAAATACTTACCTGACTCCTCATCAGATGGGAAAAAAGCGGACATGAAAGAAACAAGGGATATTGTTTCCAATCTAGATGGTTCATCTGGGATGCAAATTACCGAAGCACTTAAGCTTCAAATGGAGGTGCAAAAGAGACTGCATGAGCAATTAGAGGTGCAGAGACAGCTACAATTACGGATAGAAGCCCAGGGTAAATACTTGAAGAAAATCATTGAAGAGCAGCAGCGGCTCAGTGGGGTTCTTTCAGAAACACTTGACTCTGGGGTTGCAGCTCCTGCTCCAGGGGATATGTGCCAAGAACCTGATAACAAGACGGACCCAGCAACCCCTGCCCCAACTTCTGAGTGCCCCCTTCTAGAGAAAACTGCCAAAGAGCGTGCCCCAGTTAAGAGTATTTCCATGGATGAATCTTTTTCATCTCATCATGAACCATTGACACCAGATTCTTGTCGCCATGTTGGTTCCCCTACTAACAGTCCTAAAGGAGAGAGGTCAACAAAGAAGCAATGGGGGAGCATGGAGGGAGCATATTCTAAACCAGAAATGGTGCTTCCGCATCAGATACTTGAGTCAAGTATACCATATCAGTAA 912 0.455 MHQPKNFPSSSIVGSNSLVHDQHMDCGGTSSTMDPVNVGSTLTNNPGLASKQRLRWTNELHERFVDAVAQLGGPDRATPKGFLRVMGVPSLTIYHVKSHLQKYRLAKYLPDSSSDGKKADMKETRDIVSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSETLDSGVAAPAPGDMCQEPDNKTDPATPAPTSECPLLEKTAKERAPVKSISMDESFSSHHEPLTPDSCRHVGSPTNSPKGERSTKKQWGSMEGAYSKPEMVLPHQILESSIPYQ. 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00068 303 MobiDBLite consensus disorder prediction 258 273 - -
Seca12g00068 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 108 IPR017930 -
Seca12g00068 303 FunFam Myb family transcription factor 50 108 - -
Seca12g00068 303 Gene3D - 50 109 - -
Seca12g00068 303 Coils Coil 140 160 - -
Seca12g00068 303 Pfam Myb-like DNA-binding domain 54 104 IPR001005 -
Seca12g00068 303 NCBIfam myb-like DNA-binding domain, SHAQKYF class 51 106 IPR006447 GO:0003677
Seca12g00068 303 Pfam MYB-CC type transfactor, LHEQLE motif 137 183 IPR025756 -
Seca12g00068 303 MobiDBLite consensus disorder prediction 194 303 - -
Seca12g00068 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 38 298 IPR044848 GO:0003700
Seca12g00068 303 SUPERFAMILY Homeodomain-like 50 105 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00068 Seca-Chr12 739024 742948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00068 86 300 G2-like Transcription Factor Family AT2G01060 66.977 1.86e-88 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca12g00068 Myb_DNA-binding 1.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00068 - - hbr:110654981 457.603