Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00065 ATGGACATGGAGGATCGAGATCAACTATCTCCGGCGGGTGCCGTTGGTGTAAGTAATGACGAGAAAGAGCAGCAAGCAGCGGGAGTGGGGATTCTTCTTCAGATCATGATGTTAGGTTTGTCTTTCGTTTTGGGTCACGTTCTTCGTCGCAAGAAAATTTACATTCTTCCCGAAGCCAGCGCTTCTCTTCTCATTGGCTTACTCGTTGGTGCACTTGCTGACATTTCTAACACTCAAACCAGCATCAGGGCGTGGTTCAATTTTCACGAGGAGTTTTTCCTCCTCTTCCTCTTACCTCCTATCATATTTCAGTCTGGCTTCAGTCTATCACCGAAACCTTTCTTCTCTAATTTTGGAGCTATTGTGACATTTGCTATATTCGGTACCTTTGTAGCTTCCATTGTAACGGGAATCTTGGTTTATCTCGGTGGTTTGATCTACCTCATGTACAGACTGCCTTTTGTTGAGTGTCTAATGTTCGGTGCTCTTATATCAGCAACTGATCCTGTCACTGTTTTGTCCATTTTTCAGGAGCTTGGCACAGATGTCAATCTATATGCCTTGGTTTTTGGAGAATCTGTTTTGAATGATGCAATGGCTATTTCTCTCTACAGGACAATGTCAGTGGTTAAAACTCATCCGTCTGGACAAAATTTCTTCATGGTGGTTGTTGGATTTTTGGAGACTTTCATTGGGTCAATGTCTGCTGGTGTTGGAGTTGGATTTATATCTGCTAACCTATTTAAGTATGCAGGGTTGAATATTGACAATCTTCAGAACTTGGAGAGTTGTCTTTTTGTTCTTTTCCCATATTTCTCGTACATGCTTGCAGAAGGTCTTGGCCTGTCTGGTATTGTATCAATATTGTTCACGGGAATGGTCATGAAGCATTACGCATATTCAAATTTGTCACAAAATTCTCAAAGATTTGTCTCTGCTTTTTTTGAGTTGATATCATCATTAGCAGAGACATTTGTATTTATCTACATGGGCTTTGATATTGCTTTGGAGAAGCATAGCTGGTCACACGTTGGATTTATATTCTTCTCCATTATATTCATTGGAATTGCAAGGGCAGCCAATGTATTCTCTTGTGCTTATCTGGTCAACTTGGTCAGACCTGCACATCAACAAATACCTCCAAAACACCAGAAAGCACTTTGGTATAGTGGTCTTCGAGGGGCAATGGCCTTTGCCCTTGCTCTGCAATCAGTTCATGATCTTCCAGAAGGACATGGACAGACCATCTTCACTGCAACAACAGCAATAATTGTTTTGACGGTATTACTAATTGGTGGTTCAACGGGTACCATGCTGGAAGCTTTAGATGTTACAGGTGGTGACAGTCATATTAATGATAGCTCATTGGCTTCAGTCGGTACCATAACAGTAAGTTTTGCAAGAAAAGGCTCTTATGCTTTCTTAAACAGTGGAAGCATTCCTTCAGTGTTGTTTCCACCTGATTGTGGAACTTTTTCCTTGAGGAATATAGCAGGAAGCTAA 1503 0.4132 MDMEDRDQLSPAGAVGVSNDEKEQQAAGVGILLQIMMLGLSFVLGHVLRRKKIYILPEASASLLIGLLVGALADISNTQTSIRAWFNFHEEFFLLFLLPPIIFQSGFSLSPKPFFSNFGAIVTFAIFGTFVASIVTGILVYLGGLIYLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSVVKTHPSGQNFFMVVVGFLETFIGSMSAGVGVGFISANLFKYAGLNIDNLQNLESCLFVLFPYFSYMLAEGLGLSGIVSILFTGMVMKHYAYSNLSQNSQRFVSAFFELISSLAETFVFIYMGFDIALEKHSWSHVGFIFFSIIFIGIARAANVFSCAYLVNLVRPAHQQIPPKHQKALWYSGLRGAMAFALALQSVHDLPEGHGQTIFTATTAIIVLTVLLIGGSTGTMLEALDVTGGDSHINDSSLASVGTITVSFARKGSYAFLNSGSIPSVLFPPDCGTFSLRNIAGS. 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00065 500 PRINTS Na+/H+ exchanger signature 106 120 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca12g00065 500 PRINTS Na+/H+ exchanger signature 121 129 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca12g00065 500 PRINTS Na+/H+ exchanger signature 92 103 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca12g00065 500 PRINTS Na+/H+ exchanger signature 161 171 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca12g00065 500 MobiDBLite consensus disorder prediction 1 21 - -
Seca12g00065 500 Gene3D - 154 206 - -
Seca12g00065 500 Pfam Sodium/hydrogen exchanger family 37 440 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Seca12g00065 500 PANTHER SODIUM/HYDROGEN EXCHANGER 18 449 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Seca12g00065 500 NCBIfam sodium/hydrogen exchanger 3 32 452 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00065 Seca-Chr12 712832 718031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00065 24 442 Antiporters AT3G05030 33.710 3.68e-51 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00065 K14724 - gmx:100810105 748.429