Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00062 ATGGCAAGCGTAAATGTTGTTGAACAAGATAATAAGCTGAAGCTGTATTCGTATTGGAGGAGCTCATGTTCCTTCCGAGTCCGAATTGCTCTCAATCTCAAAGGTTGGAGGTACCTACCAACTCTCTCTTTTGCATTCCTTGATCTCACTCTCTTCTTACCTTTGCATTCAGGGCTCAAATATGAGTACAAACCAGTCAATCTGTTGAAGGGAGAAAATTCTCACCCTGAGTTTCTCGAGCTCAACCCTGTTGGTTTTGTTCCCGTTCTGGTGGATGGCCATGCTGTAATTTCTGACTCTTTCGCCATTATTATGTATTTGGAGGATAAGTATCCTAACCATCCTTTGCTACCAAGTGATATTCATAAAAGAGCAATCAATTTCCAGGCTGCCAGTATTGTTTCCTCATCAATACAACCTCTTCAAAACCTAAGTTTACTGAATTACATCGAGGAAAAAGTTAGCCCTGATGAAAAACTTCCTTGGGCTCAACGTGTAATTAGAAAAGGCTTCACAGCACTTGAAAAGCTATTGAAAGAACACACAGGAAAATATGCAACTGGAGATGAAGTTTTGCTGGCGGATATATTTTTAGCACCTCAATTATATGCTGCATTTAAGAAATTCAACATTGACAAGAACGAGTTCCCTATTCTATCAAGATTACATGAGACATATTATGCGATCCCAGCATTCCGGGAGGCTTTGCCAGATAACCAGCCAGATGCAGTACCCTAG 738 0.4065 MASVNVVEQDNKLKLYSYWRSSCSFRVRIALNLKGWRYLPTLSFAFLDLTLFLPLHSGLKYEYKPVNLLKGENSHPEFLELNPVGFVPVLVDGHAVISDSFAIIMYLEDKYPNHPLLPSDIHKRAINFQAASIVSSSIQPLQNLSLLNYIEEKVSPDEKLPWAQRVIRKGFTALEKLLKEHTGKYATGDEVLLADIFLAPQLYAAFKKFNIDKNEFPILSRLHETYYAIPAFREALPDNQPDAVP. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00062 245 CDD GST_C_Zeta 122 240 IPR034330 -
Seca12g00062 245 Gene3D Glutaredoxin 10 41 - -
Seca12g00062 245 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 120 245 IPR010987 -
Seca12g00062 245 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 11 115 IPR004045 -
Seca12g00062 245 Pfam Glutathione S-transferase, C-terminal domain 152 232 IPR004046 -
Seca12g00062 245 PANTHER MALEYLACETOACETATE ISOMERASE 13 243 - -
Seca12g00062 245 Pfam Glutathione S-transferase, N-terminal domain 15 114 IPR004045 -
Seca12g00062 245 SFLD Glutathione Transferase (cytosolic) 57 224 IPR040079 -
Seca12g00062 245 SUPERFAMILY GST C-terminal domain-like 115 243 IPR036282 -
Seca12g00062 245 CDD GST_N_Zeta 13 108 IPR034333 -
Seca12g00062 245 SUPERFAMILY Thioredoxin-like 11 118 IPR036249 -
Seca12g00062 245 SFLD Main (cytGST) 57 224 - -
Seca12g00062 245 Gene3D Glutaredoxin 49 118 - -
Seca12g00062 245 FunFam Maleylacetoacetate isomerase 119 245 - -
Seca12g00062 245 NCBIfam maleylacetoacetate isomerase 58 243 IPR005955 GO:0003824|GO:0005737|GO:0009072
Seca12g00062 245 Gene3D - 119 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00062 Seca-Chr12 692088 695586 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00062 12 243 Glutathione S-transferase Gene Family AT2G02380 57.759 9.36e-93 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00062 K01800 - gmx:547590 344.354