Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00059 ATGAGTGAAAGAATATTAGTGATTCTGCTGCTTGTTTTCAAGTACTTGTTGATTGCGGAAGGAGAAACGGCTAATGGGGATTTGGTCACTCTAAAGTCTCTTATGGATACCTTGAAGAACACCCCTCCTAGTTGGGTGGGTTCAGATCCTTGTGATGATTGGGATGGAATTGAGTGCAAGAATTCACGTGTCACATCCATAACATTATCAACCACTGGTTTGGAAGGTCAGCTTTCTGGAGATATTGGATCACTATCTGAATTGGAGACTTTGGATCTATCTTACAACAAGGACTTGACAGGATCGCTTCCACAATCCATTGGAGAGTTGAAGAAGCTGTCAACCTTAATTCTTGTTGGTTGTAGCTTCAATGGTCCTATTCCAGACAACATAGGATATCTCCAGGAGCTCCGCTACTTATCTTTAAATTCCAATCGCTTTAATGGACAAATTCCGCATTCTATTGGTAATTTATCAAAGCTTTATTGGTTAGATTTAGCTGAAAATGAACTTGAAGGGCCCATCCCAGTATCTAGTGACAGCCTCTCTGGTCTTGATAAGTTACTCAAAGCCAAGCATTTTCATCTTGGGAAGAATAACCTCTCAGGCAGTATTCCTTCTCAACTTTTTAACTGGGAAATGTCTCTGATTCATTTGCTTTTAGAAAGCAATCAACTCACTGGCAATATTCCATCTACACTTGGGGAAGTTCAGAGTCTGGAGGTGGTGCGATTGGATAGTAATTCATTAAGTGGACCTGTACCTCCAAACATCAACAATCTTACACATGTTCAAGATCTGTACTTGTCCAACAATAAACTTTCAGGCTCTCTGCCAAACCTTGCTGGAATGGATGTCCTCAGCAACCTGGACATGAGCAACAACAGTTTTAAGCCATTGGATTTTCCACCATGGTTTTCTACTCTCAAGTCTTTAACAACATTAAAGATGGAGAGAACACAACTTCAAGGACAGGTTCCTGCTTCTTTGTTCAGTCTTGCCAATTTACAGACTGTGGTTCTAAAACACAACAAGATAAATGGAACCTTGGATGTAGGCTCCTCCTACAGCAACCAGCTGCGACTTATTGATTTGGAGACCAATTCAATTGACGAGTTTAAGCAAAAAGATGGAGTGTCAAATATCAATATAATACTTAAAGATAACCCAATTTGTGATGAAATTGGAGCAGTGGGGAGCTACTGCTCCAGTTTTCAACGTGAAGTCTCATACACAACACCAACAAATAATTGTGAAGTTGGTACCTGCAGTGCAGAACAGGTTCCTAGCCCTGACTGTGCATGTGCATATCCTTATACAGGAACCTTAACTTTCAGAATACCCTCCTTTTCAAACCTTGATAACAAAACTCACTACCAAATGCTTGAGGAGGGTCTTATGCATTCTTTTAAGTCTCATTATCTACCTGTGGATTCAGTTATGTTGAGCCATCCAACTAAGGATTCAAATCAGTATCTTAAATTGAGCTTACAAGTTTTCCCATCAGGACAAGATCATTTCAACCGATCAGGGGCTTTTAGCATTGGTTTTATGCTGAGCAATCAGACTTTTAAGCCACCTAAAGATTTTGGACCATACTATTTTATTGCAGATAAATATGGACACTTTGAGATTTCTGCTCATCTCATCAATCAACATGTAGAAGGAAGTAAATCTTCAAACATTGGAATCATAATTGGAGCAGCAGTTGGTGGTTCAGTCTTGCTAGTGTTGTTACTCTTAGCAGGTGTTTATGCTTTCCGCCAAAAGAAAAGGGCTGAGAAAGCAATTGAACAAAGCAATCCTTTTAGAGGCTGGGACATATCTGAGAGCAACAGTGACATACCTCAGTTAAAAGAAGCAAGGCGGTTTTCTTTTGAAGAGCTTAAAAAATACACCAAAAATTTTTCTCAAGCCAATGATATTGGATCTGGGGGTTTTGGAAAGGTTTATAAAGGAATCCTTCCAAATGGGCAACTGGTAGCAATAAAACGAGCTCAAAAAGAATCAATGCAGGGAAAGCTTGAGTTTAAAGCTGAGATTGAACTCTTATCAAGGGTGCACCATAAAAATCTTGTTAGCCTTCTTGGATTCTGCTTTGAGCAAGAGGAACAAATGCTGGTTTATGAGTATGTTCCAAATGGAACTTTAAAGGATTCTCTCTTAGGGAAATCAGGAATTAGATTGGACTGGATTAGAAGGCTAAAAGTAGCCCTTGGTGCTGCCAGGGGTTTGGCTTATCTTCATGAACATGCCAATCCTCCTATCATTCATAGGGACATCAAATCAAACAATATTTTGCTGGATGAGAGGTTAAATGCCAAAGTTGCTGATTTTGGTCTCTCCAAGTCTATGGTTGATTATGAAAAAGATCATGTCACCACTCAAGTTAAAGGAACAATGGGATACATGGATCCAGAGTATTATATGTCTCAACAATTGACTGAGAAGAGCGATGTTTATAGTTTTGGAGTGCTGCTGTTGGAGCTGATATCAGGTAGAAGGCCATTAGAACGAGGGAGGTATATTGTGAAAGAGGTTAAGAGTGCATTTGATAAGACAAAAAGTTTGTATGGTCTTGATGAAATTATTGATCCAGCCATTGGTTCAGTTTCCACACTAAACGGTTTTGAGAAGTTATTAGATGTTGCCATGAAATGTGTTGAAGAGACAGGTGTTGAGAGGCCTAAAATGAGTGACGTGGTGAGAGAAATTGAAAACATATTGAAGTCAAACCCAAGTGCGAGGGATGAAGAATCACCATCAATTTCTTCCAGTTATGAGGAGGTAAGCAGAGGGAGTTCCTCATGCCATCCTTATAGTAACGAGCTATTTTGA 2838 0.3957 MSERILVILLLVFKYLLIAEGETANGDLVTLKSLMDTLKNTPPSWVGSDPCDDWDGIECKNSRVTSITLSTTGLEGQLSGDIGSLSELETLDLSYNKDLTGSLPQSIGELKKLSTLILVGCSFNGPIPDNIGYLQELRYLSLNSNRFNGQIPHSIGNLSKLYWLDLAENELEGPIPVSSDSLSGLDKLLKAKHFHLGKNNLSGSIPSQLFNWEMSLIHLLLESNQLTGNIPSTLGEVQSLEVVRLDSNSLSGPVPPNINNLTHVQDLYLSNNKLSGSLPNLAGMDVLSNLDMSNNSFKPLDFPPWFSTLKSLTTLKMERTQLQGQVPASLFSLANLQTVVLKHNKINGTLDVGSSYSNQLRLIDLETNSIDEFKQKDGVSNINIILKDNPICDEIGAVGSYCSSFQREVSYTTPTNNCEVGTCSAEQVPSPDCACAYPYTGTLTFRIPSFSNLDNKTHYQMLEEGLMHSFKSHYLPVDSVMLSHPTKDSNQYLKLSLQVFPSGQDHFNRSGAFSIGFMLSNQTFKPPKDFGPYYFIADKYGHFEISAHLINQHVEGSKSSNIGIIIGAAVGGSVLLVLLLLAGVYAFRQKKRAEKAIEQSNPFRGWDISESNSDIPQLKEARRFSFEELKKYTKNFSQANDIGSGGFGKVYKGILPNGQLVAIKRAQKESMQGKLEFKAEIELLSRVHHKNLVSLLGFCFEQEEQMLVYEYVPNGTLKDSLLGKSGIRLDWIRRLKVALGAARGLAYLHEHANPPIIHRDIKSNNILLDERLNAKVADFGLSKSMVDYEKDHVTTQVKGTMGYMDPEYYMSQQLTEKSDVYSFGVLLLELISGRRPLERGRYIVKEVKSAFDKTKSLYGLDEIIDPAIGSVSTLNGFEKLLDVAMKCVEETGVERPKMSDVVREIENILKSNPSARDEESPSISSSYEEVSRGSSSCHPYSNELF. 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00059 945 Gene3D Ribonuclease Inhibitor 24 181 IPR032675 -
Seca12g00059 945 Gene3D Ribonuclease Inhibitor 182 282 IPR032675 -
Seca12g00059 945 FunFam Leucine-rich repeat protein kinase family protein 181 280 - -
Seca12g00059 945 Pfam Protein tyrosine and serine/threonine kinase 639 904 IPR001245 GO:0004672|GO:0006468
Seca12g00059 945 MobiDBLite consensus disorder prediction 910 945 - -
Seca12g00059 945 ProSitePatterns Serine/Threonine protein kinases active-site signature. 756 768 IPR008271 GO:0004672|GO:0006468
Seca12g00059 945 CDD STKc_IRAK 642 908 - -
Seca12g00059 945 FunFam Leucine-rich repeat family protein 26 180 - -
Seca12g00059 945 MobiDBLite consensus disorder prediction 914 945 - -
Seca12g00059 945 Gene3D Transferase(Phosphotransferase) domain 1 712 931 - -
Seca12g00059 945 Gene3D Phosphorylase Kinase; domain 1 606 711 - -
Seca12g00059 945 SUPERFAMILY Protein kinase-like (PK-like) 622 934 IPR011009 -
Seca12g00059 945 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 712 921 - -
Seca12g00059 945 FunFam Leucine-rich repeat protein kinase family protein 604 711 - -
Seca12g00059 945 SMART serkin_6 636 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00059 945 SUPERFAMILY L domain-like 58 375 - -
Seca12g00059 945 ProSitePatterns Protein kinases ATP-binding region signature. 642 664 IPR017441 GO:0005524
Seca12g00059 945 PANTHER RECEPTOR-LIKE PROTEIN 55 32 908 - -
Seca12g00059 945 Gene3D Ribonuclease Inhibitor 283 429 IPR032675 -
Seca12g00059 945 ProSiteProfiles Protein kinase domain profile. 636 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00059 Seca-Chr12 670741 676719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00059 8 945 Receptor kinase-like Gene Family AT5G49760 55.614 0.0 959
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Seca12g00059 PK_Tyr_Ser-Thr 7.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00059 - - gmx:100811702 1453.73