Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00055 ATGATCCGAACCGAAAACTTCCGCTCCATCGGGCTCAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCTAAAGGCATCCGAACCAGTTGGATTATGAATGAGTATCGCTTGCCACAACATGAAACTGAACGATATCAAAAGGTTGAGATATCGCTTTGCCGGGTATACAAGAGAGCTGGAGTAGAAGACCATCCGTCCCTCCCTCGCTGTCTCCCAACAAAGCCATCCTCGTCAAGAGACAAGAAGCAGAATGAAATGGTGGTAGGATTTGGTGGACAATCAAAGGCAATCGATCAGATAAACGAAAATACGGAGGGAAATTCGGATGTGACGACAGCTCTTGCGCTCTCAAAGCACAATGCTTACCGTGCTGCAATGGGACTGCCAATGCCAATGGAAGAGGAAGGGTTGATGATCATGCAGCAGCAGCAATCTAAGCAACAACCACATGCTACCAACTCTTTACTCTCCTCGATCTACCCTGCTGCTTGTGGTGCTTCTTCTTCGGGTTCATCGAATAACAATGTAGCAGCAGTAGCAATGATGGATGATCTGAATAGGCTAGTGAGTTATCCGCAGGAGTTCTACAATGTTCAATTTCAAAGCCATCCCAATCATCACTTATCTACTTTGCTGATGCAACCTCCTGCTCCTGCTCCACCTGTTGTACTACCAATGTCTCTCAACTCACTACCAAATCCACTTCCAACTACCTTCTCTGACCGACTGTGGGATTGGAATCTAATGCCTGAGGTAAATCAAGAGCACAACAACATCTCCTTCAAGCAATGA 795 0.4604 MIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKVEISLCRVYKRAGVEDHPSLPRCLPTKPSSSRDKKQNEMVVGFGGQSKAIDQINENTEGNSDVTTALALSKHNAYRAAMGLPMPMEEEGLMIMQQQQSKQQPHATNSLLSSIYPAACGASSSGSSNNNVAAVAMMDDLNRLVSYPQEFYNVQFQSHPNHHLSTLLMQPPAPAPPVVLPMSLNSLPNPLPTTFSDRLWDWNLMPEVNQEHNNISFKQ. 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00055 264 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 147 - -
Seca12g00055 264 Gene3D NAC domain 1 62 IPR036093 GO:0003677|GO:0006355
Seca12g00055 264 ProSiteProfiles NAC domain profile. 1 59 IPR003441 GO:0003677|GO:0006355
Seca12g00055 264 Pfam No apical meristem (NAM) protein 9 38 IPR003441 GO:0003677|GO:0006355
Seca12g00055 264 SUPERFAMILY NAC domain 8 58 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00055 Seca-Chr12 633733 635102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00055 1 75 NAC Transcription Factor Family AT2G02450 82.667 2.25e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca12g00055 NAM 1.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00055 - - vum:124824712 306.219