Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00050 ATGTCGGAAATGCGGGTGTCTGATCCAAGCAAGCTTCACCTGAAGAAGGAGCTCACCCAAATTCGTAAGGCTGCTCGTGTATTGAGGGATCCTGGAACAACGTCTTCATGGAAGTCTCCACTTAGTTCCTCAAGATCTGTGGCTGCATGGAAGGACAGTGGCAGTAGAAGGTTCAGTGGCAACGCCAATTCTCAACTTGATTCTGGGAATGCTATTGCTAACAACGGCAACAATAATGACAAAGAGAAAGAGAAGAGGGTGTTCTTGTACAACTGGAAGAATTACAAATCGTCAAGCGACAAGAGTGGAGTTGCTAAATACAATGAGGAAGAAGAAGATGGTGGATCTTCATCGATTCTGGGAAGTTTTGAGGACAGTTTGAGTGATGCTCGCAATGGTTGCGATTCAAAGAGTGATGGTGGAACTCGCTCTTCCATTTTCCGATGTGGAGATGCAAATCTTGTTTCCTTGGGCACTCCTGCTGCTAGAAGAACAGTCCCCATTAAGAAAAAGAGTAAGAAAACCAACCCCCATTTTGATTTTTTAACAAAATACCAACAAAATCTAGGTAGAAAACTTGTGAGTTCCAACTCCAAGGCATTGCTGGAGGAGCATCCTTCAATGCCTTTTTTTACCAGGGATGACTCTGTTGAGCACTCTGATGATACTGAGGATTACTGTCATTCGGAGGATGTGAGACGAGTTTCAGGGGCTTCTCCTTTGCTTCTGAAACTCAAGCATAAGAATTGGTCTCGCTCTTCCTCCAAGTTTTTGAGAAGAAGCCGAAAAGAGGACTCTTCTTATAGTACCCCTGCATTGTCAACCAGTTCTTACAATAGGTACGGTCGCCGGTATCCAAGCACTGTTGGATCCTGGGATGGCACCACGACCTCAATGAATGATGGTGATGTTGATGATGACATGGATGATCATTTGGATTTGCCTGGCCGCCAAGGATGTGGAATTCCTTGCTATTGGTCTAAGAGGACACCTAAACATAGAGGGATGTGTGGGGGTTGTTATTCTCCTTCACTATCAGACACTTTAAGGAGGAAAGGAAGCAGCATACTCTGTGGAAGTCAAACTATTTATCCAAGACACCGGAGATCTGCCTCAGCCTCCCACAAGCGGAGAATTTCTTTGAGGAGTGCTCAAGGTGTTATTCCGTTGCTCACTAACAGTGGTGATGTTAGAGAAGGGTCTTCTATAGGAACTGGTAGGAGTGATGATGAACTTTCTACAAACTTTGGGGAGCTTGATCTTGAGGGCTTGAGCCGACTGGACGGAAGAAGGTGGTCATCAAGTTGTAGGAGTCAAGAGGGATTGGAGATTGTGGCTCTCAATGGGGAAGGGGAGGATGAAGGCACACCAGAAAACAGTAGGAGTTTCAGCCAGAAATATAAGCCTATGTTCTTTGGTGAACTGATTGGGCAGAATATTGTGGTTCAGTCACTTATCAACGCTATTTCAAGGGGTCGAATTGCTCCTGTCTATCTATTTCAAGGTCCACGTGGGACTGGTAAAACATCAACGGCTAGGATATTTGCTGCTGCCTTGAATTGTGTGGCTTCTGATGAGAGTAAGCCTTGTGGTTACTGCAGCGAATGTGCTGATTTCGTTTCTGGAAAGACCAGTGATATAGTGGAAGTTGATGGAACTAATAAGAAAGGAATTGATAAAGCTAGATATCTACTAAAAAGATTGTCAATTGGGCCTTCATCAGCCTCCTCACGATATACAGTTTTTGTTATTGATGAGTGTCACTTGTTACCCTCCAAGACATGGCTGGGATTTCTCAAGTTTCTGGAAGAACCACCTCAGCGAGTTGTGTTCATATTTATAACATCTGATCTTGACAATGTGCCACGAACAATACAATCTCGATGCCAGAAATACCTTTTCAATAAAATTAAAGATGGGGATATTGTGACCAGGTTAAGGAAAATATCTGCTCAGGAGAACCTGGATGTTGAAACAGATGCACTGGACCTCATTGCTATGAATGCTGATGGTTCACTTCGAGATGCAGAAACAATGTTAGAACAGCTTAGTTTACTGGGAAAAAGAATTACTACTTCTCTTGTCAATGAACTTGTGGGAGTTGTTTCAGATGAAAAGTTATTGGAACTTTTGGAGTTAGCAATGTCATCGGACACTGCAGAGACGGTGAAAAGGGCCAGGGAATTAATGGACTCTGGAGTTGATCCAATGGTTTTAATGTCTCAACTAGCTGGCCTAATTATGGACATAATTGCTGGATCATATACAGTCATTGATACCAAACCTGATGATTCATTCTTTTGTGGACGGAGTTTGAATGAATCAGAGTTGGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGGACATCCAGTGAACGCTCAACATGGTTCACAGCAACTCTGTTACAGCTTGGTTCTATACCTTCTCCAGATCTCACCCAGTCAGGCAGCAGCAGGAGGCAGAGCGGAAAAACAACTGAAGATGATCCATCAAGTGCTTCCAGAGACGTTACTTCTTTCAAGCACAAGTCAGACCTCCAATATATGCCTCAAAAGTCAGCATCCCCTGCATCCCAGCAAAAAGCAGTAAATGGCAGTTCCAGCCATCAAAAGGATATGTCCTCAAAGATTGATGGTTTCAGCTTGAAATCAAAGCCGTCAAGCAGCCCACTCATAGACGATGGCTCCACAGTGGTCTCATCTGATGATCTTATGGTTGCAAATACAATGTTTAGATGCATAGATTCAGGGAAGTTATGTGACATATGGGCACATTGTATTGGGAGGTGCCATTCTAAGACATTGAGGCAGTTGCTACACAATCATGGAAAGCTTGTGTCCATATGTGAAGTTGAAGGTGTTCTGGTAGCATATGTTGCATTTGGGGATGGAGATATTAAACTTAGGGCTGAGAGGTTTTTAAGAAGCATTACAAACTCGATGGAAATGGTTCTTAGACGCAATGTGGAGGTGAGAATTATCCATTTACCAGATGATGAAGGTGGAAATCAGGTTAATCTACCAGGTCTAAAGCAGGCAGCGGCTACAGTAGCAAGTGAGAAGGAACAAAGACGAGGTCATATGAATGGAAAAGAGTCTTATTCTAGCTTGCCTCCTTTACTGGATGGAAACCTTCCATCTACCACCGGTTCATCAGATATTCTGGGTGAAGGAAATGGTATGAGGGAGAGGAGACAGGATAATCCAATGCAGAGAATCGAATCCATCATTCGTGAGCAAAGGTTGGAAACTGCGTGGTTACAGGCTGTAGAAAAAGGTTCCCCTGGATCATTGAGTCGTTTGAGACCTGAGAAGAATCAAGTCCTGCCGCAGGATGGTATCTATTGTGTAGACCCAATGGAGTCCATGGATTCAACGAGATTTTCCTCTCATCAACAATGGGAAGATGACACAAATAATGATGGCAAAGTTTTGAGCCTTAAAAATGGAAGAGTCCTTCAGAAGGATCAGATTAGTAAAAGGACAGATCGTTATCCTATGTCTCCAAGTTTATTGCATGACAGCAGTTTAGCAACAATTTCTGGAAAAGATAATATGGGATATGAGTCAGGCTCTGGACAAGGAGGTTGTGGATTTTTATGTTGGAATAACTCCAAGACTAGAAGGGTCCTAAAGGTGAAAGGCACCCCAGTTGGAGCGCGTAAAGTTGGGCGTTTTACATTGTTTGGTGAGTGTGGTAAGCCAAAGAAAAAGGAAGGGAGAAGATAA 3750 0.4333 MSEMRVSDPSKLHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWKDSGSRRFSGNANSQLDSGNAIANNGNNNDKEKEKRVFLYNWKNYKSSSDKSGVAKYNEEEEDGGSSSILGSFEDSLSDARNGCDSKSDGGTRSSIFRCGDANLVSLGTPAARRTVPIKKKSKKTNPHFDFLTKYQQNLGRKLVSSNSKALLEEHPSMPFFTRDDSVEHSDDTEDYCHSEDVRRVSGASPLLLKLKHKNWSRSSSKFLRRSRKEDSSYSTPALSTSSYNRYGRRYPSTVGSWDGTTTSMNDGDVDDDMDDHLDLPGRQGCGIPCYWSKRTPKHRGMCGGCYSPSLSDTLRRKGSSILCGSQTIYPRHRRSASASHKRRISLRSAQGVIPLLTNSGDVREGSSIGTGRSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEDEGTPENSRSFSQKYKPMFFGELIGQNIVVQSLINAISRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVASDESKPCGYCSECADFVSGKTSDIVEVDGTNKKGIDKARYLLKRLSIGPSSASSRYTVFVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISAQENLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYTVIDTKPDDSFFCGRSLNESELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSIPSPDLTQSGSSRRQSGKTTEDDPSSASRDVTSFKHKSDLQYMPQKSASPASQQKAVNGSSSHQKDMSSKIDGFSLKSKPSSSPLIDDGSTVVSSDDLMVANTMFRCIDSGKLCDIWAHCIGRCHSKTLRQLLHNHGKLVSICEVEGVLVAYVAFGDGDIKLRAERFLRSITNSMEMVLRRNVEVRIIHLPDDEGGNQVNLPGLKQAAATVASEKEQRRGHMNGKESYSSLPPLLDGNLPSTTGSSDILGEGNGMRERRQDNPMQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGIYCVDPMESMDSTRFSSHQQWEDDTNNDGKVLSLKNGRVLQKDQISKRTDRYPMSPSLLHDSSLATISGKDNMGYESGSGQGGCGFLCWNNSKTRRVLKVKGTPVGARKVGRFTLFGECGKPKKKEGRR. 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00050 1249 CDD AAA 476 634 - -
Seca12g00050 1249 MobiDBLite consensus disorder prediction 32 77 - -
Seca12g00050 1249 Gene3D - 454 635 IPR027417 -
Seca12g00050 1249 MobiDBLite consensus disorder prediction 25 80 - -
Seca12g00050 1249 SMART AAA_5 494 644 IPR003593 GO:0016887
Seca12g00050 1249 NCBIfam DNA polymerase III subunit gamma/tau 462 811 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Seca12g00050 1249 Gene3D - 701 815 - -
Seca12g00050 1249 FunFam DNA polymerase III subunit gamma/tau 458 636 - -
Seca12g00050 1249 MobiDBLite consensus disorder prediction 814 828 - -
Seca12g00050 1249 CDD HLD_clamp_pol_III_gamma_tau 637 700 IPR045085 -
Seca12g00050 1249 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 464 876 - -
Seca12g00050 1249 MobiDBLite consensus disorder prediction 1027 1077 - -
Seca12g00050 1249 MobiDBLite consensus disorder prediction 814 901 - -
Seca12g00050 1249 MobiDBLite consensus disorder prediction 1047 1062 - -
Seca12g00050 1249 MobiDBLite consensus disorder prediction 829 849 - -
Seca12g00050 1249 Pfam DNA polymerase III subunits gamma and tau domain III 691 811 IPR022754 GO:0003887
Seca12g00050 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 684 IPR027417 -
Seca12g00050 1249 Gene3D - 639 700 - -
Seca12g00050 1249 MobiDBLite consensus disorder prediction 97 122 - -
Seca12g00050 1249 MobiDBLite consensus disorder prediction 851 901 - -
Seca12g00050 1249 SUPERFAMILY post-AAA+ oligomerization domain-like 708 809 IPR008921 GO:0003677|GO:0006260
Seca12g00050 1249 Coils Coil 770 800 - -
Seca12g00050 1249 Pfam DNA polymerase III, delta subunit 477 637 - -
Seca12g00050 1249 FunFam DNA polymerase III subunit gamma/tau 638 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00050 Seca-Chr12 589408 596558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00050 458 752 Core DNA Replication Machinery Family AT1G21690 23.684 8.52e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00050 - - gmx:100814391 1989.16