Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00046 ATGGAACTTTCCAGCCAAGAAGGAGAAATCCCAATCCCAATAAACACTAGTTATGGTGGGGGACATAATGGGAATGGTCATGGACATGGACACATGAATATTCATCATCATGACCATAACCACAACAACATTATATCTTCCTCACAAAATCCTTCCAATGGTTCCTCTATGCAAGCAGGAGGTGGTGCAGGGTTGGAGGATCATGGAGGCTACAAGAAAGTGCAGGTGAGGTACAGAGAATGCCTAAAGAACCATGCAGCTGCAATGGGAGGGAATGCCACAGATGGTTGTGGTGAGTTCATGCCAAGTGGAGAAGAAGGGACCATAGAGGCACTCAACTGCTCTGCCTGCCATTGTCACAGAAACTTCCACAGAAAAGAAGTAGAAGGTGACCCTTTGCCTCCTCCTGATCACTTCCACCATTTCAAGCAGCAGAGGAAGTTCCTTTTAGGCCATCATCATCATAAGAACATTCTAGCAACCCCTGAGGCTCTTGGCTACCCTTCAGGTAACATTCTACCTTCTAGAACTGTCCCACCCCACCACATGATAATGCCCTACAACATAGGACCCCTTCCCTCTGAATCTGATGAACAAGAAGAGGCTGCTGGTGGAGGAGGAGGCATGGTGGCTAGACCCACACAGCTTGTGAAGAAGAGGTTCAGGACAAAGTTCACACAAGAACAGAAGGAGAAAATGCTAAACTTTGCAGAGAAGGTTGGGTGGAAAATTCAGAAGCAAGAGGAATCTGTAGTGCAACAGTTCTGCCAAGAGATTGGTGTGAAAAGAAGAGTGCTCAAGGTTTGGATGCATAACAATAAGCACAATCTAGCCAAGAAGAATCTCCCAACTGCTTAA 858 0.4627 MELSSQEGEIPIPINTSYGGGHNGNGHGHGHMNIHHHDHNHNNIISSSQNPSNGSSMQAGGGAGLEDHGGYKKVQVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGTIEALNCSACHCHRNFHRKEVEGDPLPPPDHFHHFKQQRKFLLGHHHHKNILATPEALGYPSGNILPSRTVPPHHMIMPYNIGPLPSESDEQEEAAGGGGGMVARPTQLVKKRFRTKFTQEQKEKMLNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNLPTA. 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00046 285 NCBIfam homeobox domain, ZF-HD class 218 274 IPR006455 -
Seca12g00046 285 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 78 127 IPR006456 -
Seca12g00046 285 MobiDBLite consensus disorder prediction 1 68 - -
Seca12g00046 285 MobiDBLite consensus disorder prediction 43 59 - -
Seca12g00046 285 MobiDBLite consensus disorder prediction 1 22 - -
Seca12g00046 285 FunFam Zinc-finger homeodomain protein 2 208 279 - -
Seca12g00046 285 Pfam ZF-HD protein dimerisation region 75 128 IPR006456 -
Seca12g00046 285 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 48 277 - -
Seca12g00046 285 SUPERFAMILY Homeodomain-like 217 279 IPR009057 -
Seca12g00046 285 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 77 128 IPR006456 -
Seca12g00046 285 Gene3D - 208 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00046 Seca-Chr12 554567 555424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00046 1 280 ZF-HD Transcription Factor Family AT2G02540 47.573 6.73e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca12g00046 ZF-HD_dimer 1.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00046 - - qsu:112015870 334.339