Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g00035 | ATGGATCATGAGAGGGACCTTGAGACAGAGGGGATGATGCCGATGGGGAACAATGGCAAAGAGGAAAGGACAGAGACAAGAGAGAGGCTCAGAGAGCCTCTGCTTTTGAAGAATAACAGGATGAACACCACCTCCCAACTTGCCATTGTCGGAGCTAATGTTTGTCCTATTGAAAGTCTTGACTACGAGATCATTGAGAATGATCTTTTCAAGCAAGACTGGAGGTCTAAAGCCAAGGCTGAGATAGGCCAGTATGTTGTCCTCAAATGGGCCCTAGCACTTCTTATTGGCTTAAGCACAGGGCTCGTTGCCTTCTTCAATAACATTGGAGTTGAGAATATTGCTGGTTTTAAGCTTCTATTCACCAACAATCTCATGCTCTCGCAAAAGTATTATCAGGCCTTTGCAGTGTACGTTGGTTGTAACATGGTTTTAGCCATTGCTGCTGCAGTCCTCTGTGCCTACATTGCCCCTGCAGCAGCAGGGTCCGGCATTCCTGAGGTGAAAGCATACCTCAATGGTGTAGATGCTCCTTCTACATTGGCTCCAAGTACCCTCTTTGTAAAGATTTTTGGTTCAATTTTTGGGGTTGCGGCCGGTTTTGTTGTGGGCAAGGAAGGACCTATGGTACATACTGGTGCTTGCATAGCTAATTTACTTGGACAAGGTGGTTCTAGAAAATATGGGTTGACCTGGAAATGGCTCAGGCATTTTAAAAATGACCGAGATCGAAGGGATTTGATCACATGTGGTGCAGCTGCTGGCGTTGCTGGTGCCTTCCGTGCCCCAGTTGGTGGTGTCCTTTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGAAGTGCTCTTCTGTGGCGGACTTTTTTTACAACAGCTGTAGTAGCTGTAGTGCTGAGAGGTTTCATGGAATTTTGTCGGGCTGGAAAATGTGGTCATTTTGGGGAAGGAGGTTTGATAATGTTTGATGTTAATTCGGCAAATCCTGCGTATAGCATACCTGACCTCCTTGTAGTTATATTTCTTGGAGTTATTGGAGGTCTTTTGGGAAGCCTTTACAATTATCTTGTGAATAAGGTCCTCCGCACTTACAGCATCATAAATGAGAAAGGCCCTATATTCAAAATTCTACTTGTCATTATCATCTCCATTTTGACCTCTTGCTGTTCATTTGGCCTTCCATGGCTATCAAAGTGTATCCCTTGTCCACCTCACTTGGGGGATCAGTGCCCAACTGTAGGGCGCTCTGGAAACTACAAGAATTTTCAGTGTCCACCTAACCACTACAATGACCTTGCCTCTCTCTTTTTTACTACTAACGATGACGCTATTCGTAATCTGTTTATTTCTGGCTCTGACAAAAGATTTCTTCTGTCTAGTCTTCTAATTTTCTTTGTGGCCATGTACTTTCTCGGAATCATCACTTATGGCATTGCCATTCCCTCTGGGCTCTTTATTCCAGCCATACTTGCAGGAGCTTCTTATGGGCGTGTTGCAGGAAGTCTCTTGAGTCCATTCACTGTTCTTGATGTGGGTTTGTTTGCCCTTCTTGGGGCTGCATCCTTCCTTGGTGGTACTATGAGAATGACTGTTTCTCTGTGTGTCATACTTCTTGAACTCACTAATAACCTGCTGATGCTCCCATTGGTAATGTTGGTTCTCCTTATTTCAAAGTCTGTGGCTGATTGTTTCAACAAAGGAGTTTATGATCAGATTATGGAAATCAAGGGGCTACCCTATATGGAAGCACATGCAGAGCCATACATGAGACAATTAATTGCAAGTGATGTTGTTACTGGTCCCTTGTTTACATTTTCTGGGATTGAAAAGGTGGGAAATATTGTGCATGCATTAAAGGTCACAAGACACAATGGATTTCCTGTAATTGATGAGCCTCCTTTCTCAGATGCTCCTGAGTTGTGTGGGTTGGTTTTGAGGTCTCATCTACTTGTACTTCTTAAACACAGGACATTCACAAAGCAAAGGGGAATGACTGGGTCCTCCATTATGAAGAAGTTCAAGGCACATGATTTTGCAAAGCCAGGTTCAGGCAAAGGGATCAAGTTGGATGATTTAGACATTTCTGAGGATGAAATGGAAATGTATGTTGATCTCCATCCTATTACCAATAGGTCACCATATACAGTTGTGGAAACTATGTCTCTAGCTAAAGCTGCTGTTCTTTTCCGCGAGCTTGGCCTTAGGCACTTGTTAGTGGTGCCACAAACACCTGGAAGGCCTCCAATTGTCGGGATCCTAACAAGGCATGATTTCATGCCTGAGCATGTCTTGGGACTGTATCCTAAATTCAACCCCCACAAGTAG | 2319 | 0.4407 | MDHERDLETEGMMPMGNNGKEERTETRERLREPLLLKNNRMNTTSQLAIVGANVCPIESLDYEIIENDLFKQDWRSKAKAEIGQYVVLKWALALLIGLSTGLVAFFNNIGVENIAGFKLLFTNNLMLSQKYYQAFAVYVGCNMVLAIAAAVLCAYIAPAAAGSGIPEVKAYLNGVDAPSTLAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSRKYGLTWKWLRHFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFMEFCRAGKCGHFGEGGLIMFDVNSANPAYSIPDLLVVIFLGVIGGLLGSLYNYLVNKVLRTYSIINEKGPIFKILLVIIISILTSCCSFGLPWLSKCIPCPPHLGDQCPTVGRSGNYKNFQCPPNHYNDLASLFFTTNDDAIRNLFISGSDKRFLLSSLLIFFVAMYFLGIITYGIAIPSGLFIPAILAGASYGRVAGSLLSPFTVLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKSVADCFNKGVYDQIMEIKGLPYMEAHAEPYMRQLIASDVVTGPLFTFSGIEKVGNIVHALKVTRHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKHRTFTKQRGMTGSSIMKKFKAHDFAKPGSGKGIKLDDLDISEDEMEMYVDLHPITNRSPYTVVETMSLAKAAVLFRELGLRHLLVVPQTPGRPPIVGILTRHDFMPEHVLGLYPKFNPHK. | 773 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g00035 | 772 | PRINTS | Chloride channel signature | 510 | 526 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Seca12g00035 | 772 | PRINTS | Chloride channel signature | 253 | 272 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Seca12g00035 | 772 | PRINTS | Chloride channel signature | 566 | 580 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Seca12g00035 | 772 | PRINTS | Chloride channel signature | 528 | 547 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Seca12g00035 | 772 | PRINTS | Chloride channel signature | 189 | 208 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Seca12g00035 | 772 | PRINTS | Chloride channel signature | 478 | 498 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Seca12g00035 | 772 | PRINTS | Chloride channel signature | 158 | 175 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Seca12g00035 | 772 | PRINTS | Plant CLC chloride channel signature | 430 | 446 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Seca12g00035 | 772 | PRINTS | Plant CLC chloride channel signature | 306 | 313 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Seca12g00035 | 772 | PRINTS | Plant CLC chloride channel signature | 63 | 71 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Seca12g00035 | 772 | PRINTS | Plant CLC chloride channel signature | 274 | 282 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Seca12g00035 | 772 | PRINTS | Plant CLC chloride channel signature | 288 | 298 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Seca12g00035 | 772 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 591 | 759 | - | - | |
Seca12g00035 | 772 | Pfam | Voltage gated chloride channel | 146 | 560 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Seca12g00035 | 772 | Gene3D | - | 579 | 762 | IPR046342 | - | |
Seca12g00035 | 772 | MobiDBLite | consensus disorder prediction | 20 | 35 | - | - | |
Seca12g00035 | 772 | CDD | ClC_6_like | 58 | 579 | - | - | |
Seca12g00035 | 772 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 22 | 762 | - | - | |
Seca12g00035 | 772 | FunFam | Chloride channel ClC3 | 81 | 395 | - | - | |
Seca12g00035 | 772 | SMART | cbs_1 | 599 | 652 | IPR000644 | - | |
Seca12g00035 | 772 | SMART | cbs_1 | 710 | 761 | IPR000644 | - | |
Seca12g00035 | 772 | SUPERFAMILY | CBS-domain pair | 583 | 757 | IPR046342 | - | |
Seca12g00035 | 772 | SUPERFAMILY | Clc chloride channel | 67 | 581 | IPR014743 | - | |
Seca12g00035 | 772 | Pfam | CBS domain | 708 | 756 | IPR000644 | - | |
Seca12g00035 | 772 | ProSiteProfiles | CBS domain profile. | 707 | 767 | IPR000644 | - | |
Seca12g00035 | 772 | Gene3D | Clc chloride channel | 81 | 578 | - | - | |
Seca12g00035 | 772 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g00035 | Seca-Chr12 | 418833 | 424078 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g00035 | 2 | 772 | Ion Channels | AT5G49890 | 76.227 | 0.0 | 1157 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g00035 | K05016 | - | cave:132178584 | 1199.88 |