Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00035 ATGGATCATGAGAGGGACCTTGAGACAGAGGGGATGATGCCGATGGGGAACAATGGCAAAGAGGAAAGGACAGAGACAAGAGAGAGGCTCAGAGAGCCTCTGCTTTTGAAGAATAACAGGATGAACACCACCTCCCAACTTGCCATTGTCGGAGCTAATGTTTGTCCTATTGAAAGTCTTGACTACGAGATCATTGAGAATGATCTTTTCAAGCAAGACTGGAGGTCTAAAGCCAAGGCTGAGATAGGCCAGTATGTTGTCCTCAAATGGGCCCTAGCACTTCTTATTGGCTTAAGCACAGGGCTCGTTGCCTTCTTCAATAACATTGGAGTTGAGAATATTGCTGGTTTTAAGCTTCTATTCACCAACAATCTCATGCTCTCGCAAAAGTATTATCAGGCCTTTGCAGTGTACGTTGGTTGTAACATGGTTTTAGCCATTGCTGCTGCAGTCCTCTGTGCCTACATTGCCCCTGCAGCAGCAGGGTCCGGCATTCCTGAGGTGAAAGCATACCTCAATGGTGTAGATGCTCCTTCTACATTGGCTCCAAGTACCCTCTTTGTAAAGATTTTTGGTTCAATTTTTGGGGTTGCGGCCGGTTTTGTTGTGGGCAAGGAAGGACCTATGGTACATACTGGTGCTTGCATAGCTAATTTACTTGGACAAGGTGGTTCTAGAAAATATGGGTTGACCTGGAAATGGCTCAGGCATTTTAAAAATGACCGAGATCGAAGGGATTTGATCACATGTGGTGCAGCTGCTGGCGTTGCTGGTGCCTTCCGTGCCCCAGTTGGTGGTGTCCTTTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGAAGTGCTCTTCTGTGGCGGACTTTTTTTACAACAGCTGTAGTAGCTGTAGTGCTGAGAGGTTTCATGGAATTTTGTCGGGCTGGAAAATGTGGTCATTTTGGGGAAGGAGGTTTGATAATGTTTGATGTTAATTCGGCAAATCCTGCGTATAGCATACCTGACCTCCTTGTAGTTATATTTCTTGGAGTTATTGGAGGTCTTTTGGGAAGCCTTTACAATTATCTTGTGAATAAGGTCCTCCGCACTTACAGCATCATAAATGAGAAAGGCCCTATATTCAAAATTCTACTTGTCATTATCATCTCCATTTTGACCTCTTGCTGTTCATTTGGCCTTCCATGGCTATCAAAGTGTATCCCTTGTCCACCTCACTTGGGGGATCAGTGCCCAACTGTAGGGCGCTCTGGAAACTACAAGAATTTTCAGTGTCCACCTAACCACTACAATGACCTTGCCTCTCTCTTTTTTACTACTAACGATGACGCTATTCGTAATCTGTTTATTTCTGGCTCTGACAAAAGATTTCTTCTGTCTAGTCTTCTAATTTTCTTTGTGGCCATGTACTTTCTCGGAATCATCACTTATGGCATTGCCATTCCCTCTGGGCTCTTTATTCCAGCCATACTTGCAGGAGCTTCTTATGGGCGTGTTGCAGGAAGTCTCTTGAGTCCATTCACTGTTCTTGATGTGGGTTTGTTTGCCCTTCTTGGGGCTGCATCCTTCCTTGGTGGTACTATGAGAATGACTGTTTCTCTGTGTGTCATACTTCTTGAACTCACTAATAACCTGCTGATGCTCCCATTGGTAATGTTGGTTCTCCTTATTTCAAAGTCTGTGGCTGATTGTTTCAACAAAGGAGTTTATGATCAGATTATGGAAATCAAGGGGCTACCCTATATGGAAGCACATGCAGAGCCATACATGAGACAATTAATTGCAAGTGATGTTGTTACTGGTCCCTTGTTTACATTTTCTGGGATTGAAAAGGTGGGAAATATTGTGCATGCATTAAAGGTCACAAGACACAATGGATTTCCTGTAATTGATGAGCCTCCTTTCTCAGATGCTCCTGAGTTGTGTGGGTTGGTTTTGAGGTCTCATCTACTTGTACTTCTTAAACACAGGACATTCACAAAGCAAAGGGGAATGACTGGGTCCTCCATTATGAAGAAGTTCAAGGCACATGATTTTGCAAAGCCAGGTTCAGGCAAAGGGATCAAGTTGGATGATTTAGACATTTCTGAGGATGAAATGGAAATGTATGTTGATCTCCATCCTATTACCAATAGGTCACCATATACAGTTGTGGAAACTATGTCTCTAGCTAAAGCTGCTGTTCTTTTCCGCGAGCTTGGCCTTAGGCACTTGTTAGTGGTGCCACAAACACCTGGAAGGCCTCCAATTGTCGGGATCCTAACAAGGCATGATTTCATGCCTGAGCATGTCTTGGGACTGTATCCTAAATTCAACCCCCACAAGTAG 2319 0.4407 MDHERDLETEGMMPMGNNGKEERTETRERLREPLLLKNNRMNTTSQLAIVGANVCPIESLDYEIIENDLFKQDWRSKAKAEIGQYVVLKWALALLIGLSTGLVAFFNNIGVENIAGFKLLFTNNLMLSQKYYQAFAVYVGCNMVLAIAAAVLCAYIAPAAAGSGIPEVKAYLNGVDAPSTLAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSRKYGLTWKWLRHFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFMEFCRAGKCGHFGEGGLIMFDVNSANPAYSIPDLLVVIFLGVIGGLLGSLYNYLVNKVLRTYSIINEKGPIFKILLVIIISILTSCCSFGLPWLSKCIPCPPHLGDQCPTVGRSGNYKNFQCPPNHYNDLASLFFTTNDDAIRNLFISGSDKRFLLSSLLIFFVAMYFLGIITYGIAIPSGLFIPAILAGASYGRVAGSLLSPFTVLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKSVADCFNKGVYDQIMEIKGLPYMEAHAEPYMRQLIASDVVTGPLFTFSGIEKVGNIVHALKVTRHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKHRTFTKQRGMTGSSIMKKFKAHDFAKPGSGKGIKLDDLDISEDEMEMYVDLHPITNRSPYTVVETMSLAKAAVLFRELGLRHLLVVPQTPGRPPIVGILTRHDFMPEHVLGLYPKFNPHK. 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00035 772 PRINTS Chloride channel signature 510 526 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca12g00035 772 PRINTS Chloride channel signature 253 272 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca12g00035 772 PRINTS Chloride channel signature 566 580 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca12g00035 772 PRINTS Chloride channel signature 528 547 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca12g00035 772 PRINTS Chloride channel signature 189 208 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca12g00035 772 PRINTS Chloride channel signature 478 498 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca12g00035 772 PRINTS Chloride channel signature 158 175 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca12g00035 772 PRINTS Plant CLC chloride channel signature 430 446 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca12g00035 772 PRINTS Plant CLC chloride channel signature 306 313 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca12g00035 772 PRINTS Plant CLC chloride channel signature 63 71 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca12g00035 772 PRINTS Plant CLC chloride channel signature 274 282 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca12g00035 772 PRINTS Plant CLC chloride channel signature 288 298 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca12g00035 772 CDD CBS_pair_voltage-gated_CLC_euk_bac 591 759 - -
Seca12g00035 772 Pfam Voltage gated chloride channel 146 560 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca12g00035 772 Gene3D - 579 762 IPR046342 -
Seca12g00035 772 MobiDBLite consensus disorder prediction 20 35 - -
Seca12g00035 772 CDD ClC_6_like 58 579 - -
Seca12g00035 772 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 22 762 - -
Seca12g00035 772 FunFam Chloride channel ClC3 81 395 - -
Seca12g00035 772 SMART cbs_1 599 652 IPR000644 -
Seca12g00035 772 SMART cbs_1 710 761 IPR000644 -
Seca12g00035 772 SUPERFAMILY CBS-domain pair 583 757 IPR046342 -
Seca12g00035 772 SUPERFAMILY Clc chloride channel 67 581 IPR014743 -
Seca12g00035 772 Pfam CBS domain 708 756 IPR000644 -
Seca12g00035 772 ProSiteProfiles CBS domain profile. 707 767 IPR000644 -
Seca12g00035 772 Gene3D Clc chloride channel 81 578 - -
Seca12g00035 772 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00035 Seca-Chr12 418833 424078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00035 2 772 Ion Channels AT5G49890 76.227 0.0 1157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00035 K05016 - cave:132178584 1199.88