Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00023 ATGCGAGAGAAAGACAATAGGAATAAGGAGGGAGATGGTGAAAATAACTTGAATTCCAGTAATGAAGATAATGTATGTTCTGATGATGTTGTTCCTGATGTGTTGAAAAGGATTTCTGAGTTAAGTGATGGTGATATTAGATCGCTTGAATTTGATTGTGAACGGGATGCATATGAATTCTATAGTGAATATGCGAAATTTAAAGGATTTGCTGTTAGGAAAGATGACGTTTATTGTGATCGGAATAAGCGTATTAAAATGAGACAATTGGTATGTAATAGGCAAGGGGAGAGGAGTGAGAAGCATTTAAATAGAACAAATAGAATTAAAGAAACTAAGACCATTACTCGTACCAATTGCCTTGCGAGGATTCGCTTGTTCCTAGATAGTAAAAATAGTAAGTGGAGGGTTGGAATGTTTGAGTCAGAACACAATCATGAGCTAACTCCTGCAAATATGGTACATTTGATGCCTGCTTATCGTGGATTGAGTGTTGCTGATAAGGCACAAGTAAACAGTCTTCACTTATACGGTATAAGGACATGTCATATAATGGGGCTAATAATGGGTCAGAAGGGTGGTCATTCAGACCTGGGATTTTGTAAGAAGGACTTCTACAATCACATTGGCAAGGAGAATAGGGCCAAAATAGAGGATGTAGATGTTTTTGCTGCTTTGTGCTATCTTCAAGCCAAGTATGATAGTAATCCAATGACATTTGTTAAGTTCACTACCACTGAAGATGATAGACTTGAAAACTTGTTATGGGCTGATGTAGGCAGTAGAATTGATTATCTATACTTTGGGGATGTAGTTGCTTTTGACACAACTTATAAAAAAAAAAAATGGGTGCTTGAAACTTTTCTTGAAGCCATGCTCAATAAAGTACCTAAGGCAGTTGTTACTGATGGGGATGGTGCCATGCGTGAAGCTATAAGGACTATAATTCCAGGTTCTGTTCACAGGCTATGTTCATGGCACCTTCATCAAAATGCTTGTGAGAACATCAAGAATCTGAAATTTCTTGAAGATTTTAAGATGTTAATATATGCAAATTTTACCCCTGAGAAGTTTGAGGAAGAATGGTTGAAGGTCATTGAGAAACATGGTTTGAACAACAATAACTGGGTTAGGAAAATGTATGACTTGAAGAGGATGTGGGCTACTGCTTATTTCAGGGGCAATTTTTCTAGTGGAATCAGGACTATGTCTATTTGTGAAGGTATTAATTCATTCATTAAGAGATATGTTCAGAGTAAAAACAATCTTGTAGATTTCCTTCACAATTTTGAGAGAGCTCTGAATGAATATAGGCATAATGAGTTAGCTTCTAATTATAAGTCTACACACACCCAACATGTTTTGAAAACTGCCTTGGAAAAATATGAAGTACATGCTTGTAACGTCTACACCAGGAAAAATTTTTTTGATGTTAGAAAGGAGATTGAGAAAGTTACTGCCTTGAATGTGGTTGATAGGACAGAGGTAGGTAATATTGTCACAATGAAGATGAATAAGTTTGGAAGTCCTAATGCCCTGTATGTTGTGATTTATGATAAGTCTCTTGGTAAGTTGATTTGTGATTGTTGCCTATTTGAATCATGTGGATTACCTTGCTCACATATTTTTTGTGCTATGAAATATGAGCAAATAGAATCAATCCCCTCTTCATTGATTTGCAAAAGGTGGACAAAATTTGCTAAAGTTAATCAGGTTTCTGCTATTTATCAAGAAGAAGGTGAAACATCCAAAAAGGAAGTGTTGAGGTCTGGTGCTGTAGGTACTACCTGTAACAGGCTTAACAAGATTGCACATAAAAATCCCCATAATTTTGTGAAAAACATTGAGGCTATCCATCGTTTGGCAGATCAAACGGAAAGGCAAGATGGCACTGATGTTAATATTGCCGACATGTCAAGGGTTGTTCGCGATCCAACAACTGTCAAAACTAAAGGTGCTCCTCGTAAGAGTAAGAAATTGATGAAGAAAAGAAAATGCTCTTATTGTAAGTGTCCATGTGACATAGTAAGGACGTGCTCCAAGTTGTCTACTCAAGATAAATTGCAAACCGTTGAAGAAGAGGAATCTTCTGTTGAAAGTGATGGTGACTCACGAGATGTAACTGTAATATTTCTTCTAATTAATTTGCATTATTCCTGA 2160 0.3648 MREKDNRNKEGDGENNLNSSNEDNVCSDDVVPDVLKRISELSDGDIRSLEFDCERDAYEFYSEYAKFKGFAVRKDDVYCDRNKRIKMRQLVCNRQGERSEKHLNRTNRIKETKTITRTNCLARIRLFLDSKNSKWRVGMFESEHNHELTPANMVHLMPAYRGLSVADKAQVNSLHLYGIRTCHIMGLIMGQKGGHSDLGFCKKDFYNHIGKENRAKIEDVDVFAALCYLQAKYDSNPMTFVKFTTTEDDRLENLLWADVGSRIDYLYFGDVVAFDTTYKKKKWVLETFLEAMLNKVPKAVVTDGDGAMREAIRTIIPGSVHRLCSWHLHQNACENIKNLKFLEDFKMLIYANFTPEKFEEEWLKVIEKHGLNNNNWVRKMYDLKRMWATAYFRGNFSSGIRTMSICEGINSFIKRYVQSKNNLVDFLHNFERALNEYRHNELASNYKSTHTQHVLKTALEKYEVHACNVYTRKNFFDVRKEIEKVTALNVVDRTEVGNIVTMKMNKFGSPNALYVVIYDKSLGKLICDCCLFESCGLPCSHIFCAMKYEQIESIPSSLICKRWTKFAKVNQVSAIYQEEGETSKKEVLRSGAVGTTCNRLNKIAHKNPHNFVKNIEAIHRLADQTERQDGTDVNIADMSRVVRDPTTVKTKGAPRKSKKLMKKRKCSYCKCPCDIVRTCSKLSTQDKLQTVEEEESSVESDGDSRDVTVIFLLINLHYS. 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00023 719 PANTHER OS01G0519700 PROTEIN 49 666 - -
Seca12g00023 719 MobiDBLite consensus disorder prediction 1 26 - -
Seca12g00023 719 Pfam FAR1 DNA-binding domain 59 149 IPR004330 -
Seca12g00023 719 ProSiteProfiles Zinc finger SWIM-type profile. 514 550 IPR007527 GO:0008270
Seca12g00023 719 Pfam MULE transposase domain 283 331 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00023 Seca-Chr12 316621 318880 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g00023 FAR1 5.6e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00023 - - tpra:123910662 649.432