LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g00017	ATGTGTCTGATGAAGGCAGAGGAGATTGCAATTTCTGCACTGAAGAGAGCTTTGAATGCTTTGAACACTCACCTTGCCTCCAATACTTACCTTGTTGGGCATTTCGTGACCCTGGCTGACATCATACTGACATGCAATTTGTATTTTGGTTTTACTAATCTCTTAGTCAAGAGCGTCACCTCAGAATTTCCTCATGTTGAGAGATACTTTTGGACCTTGGTCAATCAGCCAAACTTTCAAAAGATATTAGGTCAGGTCAAGCAGACTGAAGCTGTACCACCTGTTCAATCAGCAAAGAAGCCTTCCCAGCCAAAAGAATCTAAGTCCAAGGTGGATGAGCCTAAGAAAGAGGCCAAGAAGGAGCCAGAAAAGCCCAAAGAAGAAGCGGAAGAGGAGGCGCCCAAGCCCAAACCCAAGAATCCCCTTGATCTTCTTCCTCCAAGTAAGATGATACTGGATGAGTGGAAAAGACTCTACTCAAACACTAAATCCAACTTCAGGGAGGTCGCAATCAAAGGATTTTGGGACATGTACGATCCTGATGGATACTCTCTCTGGTTCTGTGATTACAAATACAATGATGAGAACACTGTTTCCTTTGTGACATTAAACAAGGTTAGTGGATTTCTTCAGCGGATGGATTTGGCCCGCAAGTATGCATTTGGAAAGATGCTTGTGATTGGATCAGAGCCACCATTTAAGGTGAAGGGGTTGTGGCTTTTCCGTGGGCAAGAAATCCCACAATTTGTTATTGATGAATGCTATGACATGGAGCTCTATGAATGGACTAAGGTTGACATCTCCTATGAATCTCAAAAGGAGCGTGTCAATCAGATGATTGAAGATTGTGAGCCATTTGAGGGGGAGCCTCTTTTGGATGCCAAGTGCTTTAAGTGA	897	0.4359	MCLMKAEEIAISALKRALNALNTHLASNTYLVGHFVTLADIILTCNLYFGFTNLLVKSVTSEFPHVERYFWTLVNQPNFQKILGQVKQTEAVPPVQSAKKPSQPKESKSKVDEPKKEAKKEPEKPKEEAEEEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKSNFREVAIKGFWDMYDPDGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPQFVIDECYDMELYEWTKVDISYESQKERVNQMIEDCEPFEGEPLLDAKCFK.	299

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g00017	298	PANTHER	ELONGATION FACTOR 1-GAMMA 1-RELATED	4	298	IPR044628	GO:0004364
	Seca12g00017	298	Pfam	Glutathione S-transferase, C-terminal domain	10	77	IPR004046	-
	Seca12g00017	298	SMART	EF1G_2	137	245	IPR001662	GO:0003746\|GO:0006414
	Seca12g00017	298	ProSiteProfiles	Soluble glutathione S-transferase C-terminal domain profile.	1	95	IPR010987	-
	Seca12g00017	298	MobiDBLite	consensus disorder prediction	103	138	-	-
	Seca12g00017	298	CDD	GST_C_EF1Bgamma_like	5	90	-	-
	Seca12g00017	298	SUPERFAMILY	GST C-terminal domain-like	6	94	IPR036282	-
	Seca12g00017	298	Gene3D	-	4	96	-	-
	Seca12g00017	298	MobiDBLite	consensus disorder prediction	90	145	-	-
	Seca12g00017	298	Pfam	Elongation factor 1 gamma, conserved domain	137	245	IPR001662	GO:0003746\|GO:0006414
	Seca12g00017	298	Gene3D	Translation elongation factor EF1B, gamma chain, conserved domain	138	298	IPR036433	GO:0003746\|GO:0006414
	Seca12g00017	298	ProSiteProfiles	Elongation factor 1 (EF-1) gamma C-terminal domain profile.	138	298	IPR001662	GO:0003746\|GO:0006414
	Seca12g00017	298	FunFam	Elongation factor 1-gamma 1	138	298	-	-
	Seca12g00017	298	SUPERFAMILY	eEF1-gamma domain	138	298	IPR036433	GO:0003746\|GO:0006414

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g00017	Seca-Chr12	265715	266910	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca12g00017	6	298	Eukaryotic Initiation Factors Gene Family	AT1G57720	71.336	1.58e-155	439

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g00017	K03233		-	gmx:547637	491.115