Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00017 ATGTGTCTGATGAAGGCAGAGGAGATTGCAATTTCTGCACTGAAGAGAGCTTTGAATGCTTTGAACACTCACCTTGCCTCCAATACTTACCTTGTTGGGCATTTCGTGACCCTGGCTGACATCATACTGACATGCAATTTGTATTTTGGTTTTACTAATCTCTTAGTCAAGAGCGTCACCTCAGAATTTCCTCATGTTGAGAGATACTTTTGGACCTTGGTCAATCAGCCAAACTTTCAAAAGATATTAGGTCAGGTCAAGCAGACTGAAGCTGTACCACCTGTTCAATCAGCAAAGAAGCCTTCCCAGCCAAAAGAATCTAAGTCCAAGGTGGATGAGCCTAAGAAAGAGGCCAAGAAGGAGCCAGAAAAGCCCAAAGAAGAAGCGGAAGAGGAGGCGCCCAAGCCCAAACCCAAGAATCCCCTTGATCTTCTTCCTCCAAGTAAGATGATACTGGATGAGTGGAAAAGACTCTACTCAAACACTAAATCCAACTTCAGGGAGGTCGCAATCAAAGGATTTTGGGACATGTACGATCCTGATGGATACTCTCTCTGGTTCTGTGATTACAAATACAATGATGAGAACACTGTTTCCTTTGTGACATTAAACAAGGTTAGTGGATTTCTTCAGCGGATGGATTTGGCCCGCAAGTATGCATTTGGAAAGATGCTTGTGATTGGATCAGAGCCACCATTTAAGGTGAAGGGGTTGTGGCTTTTCCGTGGGCAAGAAATCCCACAATTTGTTATTGATGAATGCTATGACATGGAGCTCTATGAATGGACTAAGGTTGACATCTCCTATGAATCTCAAAAGGAGCGTGTCAATCAGATGATTGAAGATTGTGAGCCATTTGAGGGGGAGCCTCTTTTGGATGCCAAGTGCTTTAAGTGA 897 0.4359 MCLMKAEEIAISALKRALNALNTHLASNTYLVGHFVTLADIILTCNLYFGFTNLLVKSVTSEFPHVERYFWTLVNQPNFQKILGQVKQTEAVPPVQSAKKPSQPKESKSKVDEPKKEAKKEPEKPKEEAEEEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKSNFREVAIKGFWDMYDPDGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPQFVIDECYDMELYEWTKVDISYESQKERVNQMIEDCEPFEGEPLLDAKCFK. 299
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00017 298 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 4 298 IPR044628 GO:0004364
Seca12g00017 298 Pfam Glutathione S-transferase, C-terminal domain 10 77 IPR004046 -
Seca12g00017 298 SMART EF1G_2 137 245 IPR001662 GO:0003746|GO:0006414
Seca12g00017 298 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 1 95 IPR010987 -
Seca12g00017 298 MobiDBLite consensus disorder prediction 103 138 - -
Seca12g00017 298 CDD GST_C_EF1Bgamma_like 5 90 - -
Seca12g00017 298 SUPERFAMILY GST C-terminal domain-like 6 94 IPR036282 -
Seca12g00017 298 Gene3D - 4 96 - -
Seca12g00017 298 MobiDBLite consensus disorder prediction 90 145 - -
Seca12g00017 298 Pfam Elongation factor 1 gamma, conserved domain 137 245 IPR001662 GO:0003746|GO:0006414
Seca12g00017 298 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 138 298 IPR036433 GO:0003746|GO:0006414
Seca12g00017 298 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 138 298 IPR001662 GO:0003746|GO:0006414
Seca12g00017 298 FunFam Elongation factor 1-gamma 1 138 298 - -
Seca12g00017 298 SUPERFAMILY eEF1-gamma domain 138 298 IPR036433 GO:0003746|GO:0006414
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca12g00017 Seca-Chr12 265715 266910 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00017 6 298 Eukaryotic Initiation Factors Gene Family AT1G57720 71.336 1.58e-155 439
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00017 K03233 - gmx:547637 491.115