Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g07120 ATGTTACACAATAACTTATCTCCATCGTCAATTCCCACTTGCGCTGAGAATAATAAGAGGAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCAGAAGTGGTGTCGCTGTCTCCGAAGACGTTGTTGGAATCAGATCGTTATGTGTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAGAACCTTCAGATGCACCGGCGGCGACACAAGGTGCCGTGGAAGCTACTGAAGAGGGAGACGGCGGTGGTGAGAAAGAGAGTGTTTGTGTGCCCAGAGGCTTCGTGTCTGCACCATGACCCATGCCACGCCCTCGGTGATCTTGTTGGCATAAAGAAGCATTTCAGAAGGAAACACAGCAATCACAAGCAATGGGTCTGTGAGAGATGCTCTAAAGCCTATGCGGTGCACTCTGATTACAAAGCACATCTCAAAACCTGTGGCACCCGAGGCCACTCTTGCGATTGTGGCCGCGTTTTCTCAAGGTTCCTTCTTCATTTTCATCACTCTACTTTTGCTAGGTTGGTGGAGAGTTTTATTGAGCATCAAGACGAGTGCAATATTAATATGGGGAGGTTAGGAGGAGATCATTGCTTGTCTCGAACAGCTTCAAGCCCCAGCCCTTGCCCTTCCACCGAAACCCTGCTTCCTAATTTAGTCATACCTCTAAAACAACCCACCAATACCAAAGCCTCTTCATCATCACTCCATCCCAACTTAGAGCTTCAGCTTTGTAATGATCATGTGATTCCTAATAAGAGATCATCAGATCCATTATCATCACCGAAGGAGAGCAGCAGTACTACCTGCAGTGAGGGAAGTGCGGCGGCGTTGAGGGTTCAAGAGCACGCACGTGAGCAGTTGAAGATAGCCATGGCCGAGAAAGCCTATGCGGAAGAGGCGAGGAAGGAAGCCAAGAGGCAGATTGAACTCGCTGAGTTTGAATTCGCAAATGCCAAAAGGATCAGACAAGAAGCCCAATCCCATCTTGAAAAAGCCAATACCTTGAAGGAGCATGCAATCAAACACATCAATTCAACATTGCTTCAAATCACTTGCCATGGTTGCAAGCAATCACGAATTACCATGGCCATGGATAATTAA 1104 0.4792 MLHNNLSPSSIPTCAENNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETAVVRKRVFVCPEASCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKAYAVHSDYKAHLKTCGTRGHSCDCGRVFSRFLLHFHHSTFARLVESFIEHQDECNINMGRLGGDHCLSRTASSPSPCPSTETLLPNLVIPLKQPTNTKASSSSLHPNLELQLCNDHVIPNKRSSDPLSSPKESSSTTCSEGSAAALRVQEHAREQLKIAMAEKAYAEEARKEAKRQIELAEFEFANAKRIRQEAQSHLEKANTLKEHAIKHINSTLLQITCHGCKQSRITMAMDN. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g07120 367 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 340 IPR031140 -
Seca11g07120 367 SUPERFAMILY beta-beta-alpha zinc fingers 45 71 IPR036236 -
Seca11g07120 367 MobiDBLite consensus disorder prediction 251 275 - -
Seca11g07120 367 MobiDBLite consensus disorder prediction 1 15 - -
Seca11g07120 367 Coils Coil 288 339 - -
Seca11g07120 367 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Seca11g07120 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 70 IPR013087 -
Seca11g07120 367 Gene3D Classic Zinc Finger 36 121 - -
Seca11g07120 367 MobiDBLite consensus disorder prediction 1 34 - -
Seca11g07120 367 MobiDBLite consensus disorder prediction 251 276 - -
Seca11g07120 367 SMART c2h2final6 125 152 IPR013087 -
Seca11g07120 367 SMART c2h2final6 48 70 IPR013087 -
Seca11g07120 367 SMART c2h2final6 89 119 IPR013087 -
Seca11g07120 367 FunFam protein indeterminate-domain 12-like 27 95 - -
Seca11g07120 367 Pfam Zinc-finger of C2H2 type 48 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g07120 Seca-Chr11 171273306 171274810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g07120 13 357 C2H2 Transcription Factor Family AT2G01940 55.699 3.70e-129 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca11g07120 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g07120 K25871 - gmx:100800187 457.988