Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g07119 ATGGAAGGAGGATCAGAGAAGTCGAATTGTGTATACAGAGAGTGTTTGAGAAACCATGCAGCGAGCCTGGGCAGCTACGCCACCGACGGATGCGGCGAGTTTACGGTGGAGGAGATGTCACCGGGAGGGCTACAATGCGCGGCGTGTGGGTGCCATCGCAACTTCCACCGGAAAGTGAAGTTGATGGAGTATGGTGGTGAAGGAATTAAGGCAATTGATCATGAGGGAGGAGAGAGGAGCAGTGGGAGTGCAGGGAAGAAGAGGTTCCGGTCAAAGTTCAGTGCAGATCAGAAGGAGAAGATGCTGGGTTTCGCAGAGAAGCTTGGGTGGAAGTTGCAAAGGAAGGATCTGGATGATGAAATAGAGAGGTTCTGCCGAAGCATTGGAGTGAGCAGACAAGTGTTCAAAGTGTGGATGCATAATCATAAGAACTCTTCTTCCTCTTCTTCCGCTTCTACTGGCAATGTCTCCTCTCTCACCCAGCAGTAA 489 0.5092 MEGGSEKSNCVYRECLRNHAASLGSYATDGCGEFTVEEMSPGGLQCAACGCHRNFHRKVKLMEYGGEGIKAIDHEGGERSSGSAGKKRFRSKFSADQKEKMLGFAEKLGWKLQRKDLDDEIERFCRSIGVSRQVFKVWMHNHKNSSSSSSASTGNVSSLTQQ. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g07119 162 Gene3D - 71 150 - -
Seca11g07119 162 MobiDBLite consensus disorder prediction 142 162 - -
Seca11g07119 162 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 12 59 IPR006456 -
Seca11g07119 162 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 7 145 - -
Seca11g07119 162 MobiDBLite consensus disorder prediction 73 93 - -
Seca11g07119 162 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 12 58 IPR006456 -
Seca11g07119 162 NCBIfam homeobox domain, ZF-HD class 86 144 IPR006455 -
Seca11g07119 162 FunFam Zinc-finger homeodomain protein 2 73 148 - -
Seca11g07119 162 Pfam ZF-HD protein dimerisation region 10 59 IPR006456 -
Seca11g07119 162 SUPERFAMILY Homeodomain-like 73 144 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g07119 Seca-Chr11 171261768 171262256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g07119 12 145 ZF-HD Transcription Factor Family AT4G24660 44.379 2.74e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca11g07119 ZF-HD_dimer 1.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g07119 - - jre:108993100 238.039