Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g07113 ATGCATGCCGGTGAGGCTGACGGAGGAAGGAGGAAGAGGAGAGGAGACAGCAACATGGCATCAAGGAAAAGCTCAGGGCGATGTTACGGTGACTCCGAAGGTACACGCGGTGGATCATGGCGGCAATTTGTGATTCATCATGATAACCGGTGGTACGTTGCGTGGAAGCATTTCATTTTGATATGGGCAGTGTACTCGTCGTTCTTCACTCCGATGGAGTTTGGTTTCTTCAGAGGCTTGCCGGAGAAGATCTTCCTCCTAGACATTGCAGGTCAATTGGCTTTCCTCATAGACATTGCGGTGCGCTTCTTCGTCGGCTATCGTGACACACACTCCTACTGCGTCGTCTATGACCGCACTCTAATTGCCATCAGATACCTCAAGTCTCGCTTCATCCTTGATCTTCTCAGCTGCTTCCCCTGGGATTATATTTACAAGGTTAGTGGGAGGAAAGAAGTGGTGAGATATCTGCTGTGGATCAGGCTAAGCCGAGCTTTCAGAGTAACCGAATTTTTCGAGAGGATGGAGAAAAACATAAGGGTGAATTACCTGTTTACCAGAATCGCGAAACTTCTGGTTGTGGAACTTTACTGCACACATACGGCTGCATGCATCTTCTACTATCTTGCAACCACCATGCCCCCCTCCAAGGAAGGTTACACCTGGATTGGCTCCTTGAAGATGGGTGACTATGCCTACTCTGACTTCAGACACATCGATCTCTGGAAGCGTTACATCACATCACTCTACTTTGCAATTGTTACCATGGCAACTGTTGGCTATGGAGACATTCATGCAGTCAATGTGAGAGAAATGATATTCATCATGATTTATGTCTCCTTTGACATGATTCTCGGCGCTTACCTTCTCGGCAATATGACCGCATTGATTGTTAAGGGATCAAAAACAGAGAGGTTCAGGGATAAAATGGATGAAATCATGAAATACATGAATAAAAACAATCTCGACAACCGCATAAGTAATGCCATCAAAGATCACTTGCGCTTGCAGTATGATCGCAGTTACGCTGACCCTTCTGTACTTCACCATATCCCAACCACCATCCGCACACAGATTTCAATAACTTTGTATGAGCAGTTCATTCAGAAAGTTCCTCTTTTCAAGGGATGCTCCTCAGGGTTTATTAAGCAGATTGTAAGAAGTTATTTATATGCTCACACCTCATCATCTAGGATATCAGAATGGTATAGTTGGAATGTGAAGTTTACGTTTTGGTATCTATATTTTAAGATAACCTCTAACCTAACTTTTCACTTAATTGTTATCAATTGGATTTGCTTAATTATCATTTTAGCGCAAATTTCCATAGTGAAATAG 1338 0.4357 MHAGEADGGRRKRRGDSNMASRKSSGRCYGDSEGTRGGSWRQFVIHHDNRWYVAWKHFILIWAVYSSFFTPMEFGFFRGLPEKIFLLDIAGQLAFLIDIAVRFFVGYRDTHSYCVVYDRTLIAIRYLKSRFILDLLSCFPWDYIYKVSGRKEVVRYLLWIRLSRAFRVTEFFERMEKNIRVNYLFTRIAKLLVVELYCTHTAACIFYYLATTMPPSKEGYTWIGSLKMGDYAYSDFRHIDLWKRYITSLYFAIVTMATVGYGDIHAVNVREMIFIMIYVSFDMILGAYLLGNMTALIVKGSKTERFRDKMDEIMKYMNKNNLDNRISNAIKDHLRLQYDRSYADPSVLHHIPTTIRTQISITLYEQFIQKVPLFKGCSSGFIKQIVRSYLYAHTSSSRISEWYSWNVKFTFWYLYFKITSNLTFHLIVINWICLIIILAQISIVK. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g07113 445 Gene3D Helix hairpin bin 301 364 - -
Seca11g07113 445 MobiDBLite consensus disorder prediction 1 20 - -
Seca11g07113 445 SUPERFAMILY cAMP-binding domain-like 301 388 IPR018490 -
Seca11g07113 445 Gene3D - 53 299 - -
Seca11g07113 445 PANTHER POTASSIUM CHANNEL AKT1 30 387 IPR045319 GO:0005249|GO:0006813
Seca11g07113 445 Pfam Ion transport protein 54 298 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca11g07113 445 SUPERFAMILY Voltage-gated potassium channels 47 298 - -
Seca11g07113 445 PRINTS EAG/ELK/ERG potassium channel family signature 65 72 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca11g07113 445 PRINTS EAG/ELK/ERG potassium channel family signature 289 298 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca11g07113 445 PRINTS EAG/ELK/ERG potassium channel family signature 88 98 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca11g07113 445 PRINTS EAG/ELK/ERG potassium channel family signature 197 207 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca11g07113 445 PRINTS EAG/ELK/ERG potassium channel family signature 245 262 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca11g07113 445 FunFam Potassium channel SKOR 53 298 - -
Seca11g07113 445 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g07113 Seca-Chr11 171225790 171231677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g07113 31 386 Ion Channels AT3G02850 68.033 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g07113 K21867 - jre:108993203 585.104