Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g07110 ATGAGCTTGCAGCGGAGGGATAGGTACAGTAACAGTAACAGGGTTCCTCGTCAACAATGGCTTCCTAGAGCATCCAATAGTGAGAAGAACGGTGGTGATGTTGGTTCCTCTGCCCATACAACTGGAAGGAGTAGTGCTCGTGCTTTGAGGAACCGTGAAGATTTACCTCAGCTTCTACAAGAGATTCAGGACAAGCTCACCAAAGGTGCTGTCGAATGCATGATTTGCTATGACACCGTGCGGAGGTCTGCGCCTATCTGGTCATGCTCTAGTTGCTACTCTATCTTTCACCTTAATTGTATAAAGAAGTGGGCTCGAGCACCCACTTCCATTGCAGATGCTGACATGAATCGAGGCTTTAATTGGCGCTGCCCTGGTTGTCAATCCGTGCAACTCACATCATCCAACCACATTCGGTATCTTTGCTTCTGTGGGAAGACCCCAGACCCACCATCTGACTTGTATCTCATGCCACATTCCTGTGGAGAATCCTGTGGGAAGCCTCTTGAGAAACCCCAACCTGATAAGGAGAATCTTTGCCCTCATCTTTGCGTTTTGCAATGCCATCCGGGTCCTTGTCCTCCTTGCAAAGCTTTTGCTCCACCACGCCTTTGTCCTTGTGGGAAGCAAAATATCACCACTCGATGCTCTGACCGCCATTCTCTCCTTACTTGTGGTCAAAACTGCGATAAGCTTCTTGAATGTGGGCGTCATAGGTGTGACCGAATTTGTCATCTGGGTCCCTGTGATCCTTGCTGTGTCCCAATCAATGCCTCTTGCTTTTGCAGCAAAAAGATGGAGGTTATTCTCTGTGGGGACATGGCTGTGAAGGGTGAAATCAGAGCACAAGGTGGAGTTTTTTCTTGTGGTTCTACTTGTGGAAAGAAGCTTGGTTGTGGTAATCATATCTGTATTGAGACTTGTCATCCAGGTAGCTGTGCCGAGTGTGATTTGTTGCCAACCCGTATTAAGACATGCTGTTGTGGGAAAACTAGATTGAAGGAGGAACGCCAGAGTTGTTTAGACCCAATACCTACCTGTTCAAAGGTATGTGGCAAGTCACTTCCTTGCAGGATGCATCATTGTAAAGAGGCGTGTCATGCTGGGGATTGTTCTCCCTGTATGGTTCTAGTCTCTCAGAAGTGTCGATGTGGCTCAACTTCTCGAACGGTGGATTGCTATAAGACAAGGATGGAGAATGAGAAATTTACTTGTGAAAAGCCTTGTGGGCGGAAAAAGAGTTGTGGAAGGCATCGATGTAGTGAACGGTGTTGTCCACTTTCTAATCCAAATAGTATGCCAAGTTCGGATTGGAATCCACACTCGTGTTCCATCCCATGTGGAAAGAAGCTAAGGTGCGGGCAGCATGCTTGTGAATCCCTGTGTCACATTGGTCATTGTCCACCTTGCCTTGAAACTATATTCACTGATTTGACATGTGCCTGTGGCGGGACTTCAATCCCACCTCCATTGCCTTGTGGTACACCACTTCCCTCATGTCAGCTTCCATGTTCACTTCCTCAGCCTTGTGGCCATCCAGCTTCCCACAGCTGCCATAATGGAGATTGTCCTCCTTGTTTAGTGCCCGTAGCAAAAGAATGTATTGGTGGACATGTACTTCTTAGAAACATACCTTGTGGTTCAAAGGATATTAGATGTAATAAGCTCTGTGGTAAGACCAGACAGTGCGGCTTACATGCTTGTGGCAGAACATGTCACCCTTCACCTTGTGATAATCAGTCTGCTGAGCAAGGTATCCAATCATCTTGTGGACAAACATGTGGTGCTCCAAGGAGAGACTGTCGGCATACATGTGTAGCTCCTTGTCATCCTTCATCTCCATGCCCAGATATAAGATGTGAATTCCCTGTCACAATTACTTGTTCTTGTGGCCGAATAAGAGCAAATGTTCCTTGTGATGCTGGTGGTAGCAATTCTGATGCCATACAGGAAACTTCCATTATTCAAAAGTTGCCTGTCCCTCTTCAACCGGTGGATGCAAATGGCAAAAAAGTTCCCCTTGGACAAAGAAAACTGATGTGTAATGAGGAGTGCCTTAAGTTGGAGCGGAAAAGGGTTCTTGCAGATGCTTTTGAGATTACCACTCCCAATCTAGATTCTCTCCATTTTGGTGAGAATTCTGGTGCATCTGAATTGCTTGCTGATATGATGAGACGCGATCCTAAATGGGTTTTATCTGTTGAGGAGAGATGCAAATTTTTGGTGCTAGGCAAGAGCAAAGGAACTACACATGATCTAAAAGTCCATGTTTTCTGTCCTATGCTAAAGGATAAGAGAGATGCAGTGATGGTGATAGCTGAGAGATGGAAGCTTGCAGTGAATGCAGCTGGTTGGGAGCCAAAGTGTTTTATAGTTGTTCATGTTACCCCAAAATCAAGAGCTCCTTCACGTGTGCTAGGAGTTAAGGGTACAACAACTATACATGCGCCCCTTCCTCCTGCATTTGATCCTTTGGTAGACATGGACCCACGACTTGTAGTCTCTTTACCAGACTTACCAAGGGATGCAGATATTAGTGCATTGGTGTTGAGATTTGGTGGTGAGTGTGAACTTGTTTGGTTAAATAACAAAAATGCATTGGCTGTTTTTAGTGATCCTGCTCGAGCTACAGCTGCAATGAGGAGGTTGGATCATGGAACTGTTTATCAAGGAGCTATTGTGGTTGTTCCAAATATTGGGGCATCCGTAGCATCTTCAGCTACCAATGCCTGGGGAGGAGGAGCGCTGGCAGCATTGAAGGGTAATCCGTGGAAAAAGGCTGTTGTTCAAGAGCCAGGTTGGAGAGAAGATTCTTGGGATGATAAGGAGTGGACTACTGGTTCTGCTTTTTGGAAGAAAGAAGACCCAATACCTGCTTCATTAAATCCTTGGAGTGTCTTGCATCCAAGTTCATCTGAAAGTAGTGTTGTCACAAAGTTGGAGCCTCATGATGGTGGTTCAAATCTAGAAGGGAAGCACGAAGGAAACTTTGATGCATCGGAAGTTTATGATGATGTAGTAGATGATTGGGAGAAGGCTTTTGCGAATGAGTGGGATGAAGTCGACAAGAAGTAA 3075 0.4579 MSLQRRDRYSNSNRVPRQQWLPRASNSEKNGGDVGSSAHTTGRSSARALRNREDLPQLLQEIQDKLTKGAVECMICYDTVRRSAPIWSCSSCYSIFHLNCIKKWARAPTSIADADMNRGFNWRCPGCQSVQLTSSNHIRYLCFCGKTPDPPSDLYLMPHSCGESCGKPLEKPQPDKENLCPHLCVLQCHPGPCPPCKAFAPPRLCPCGKQNITTRCSDRHSLLTCGQNCDKLLECGRHRCDRICHLGPCDPCCVPINASCFCSKKMEVILCGDMAVKGEIRAQGGVFSCGSTCGKKLGCGNHICIETCHPGSCAECDLLPTRIKTCCCGKTRLKEERQSCLDPIPTCSKVCGKSLPCRMHHCKEACHAGDCSPCMVLVSQKCRCGSTSRTVDCYKTRMENEKFTCEKPCGRKKSCGRHRCSERCCPLSNPNSMPSSDWNPHSCSIPCGKKLRCGQHACESLCHIGHCPPCLETIFTDLTCACGGTSIPPPLPCGTPLPSCQLPCSLPQPCGHPASHSCHNGDCPPCLVPVAKECIGGHVLLRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHPSPCDNQSAEQGIQSSCGQTCGAPRRDCRHTCVAPCHPSSPCPDIRCEFPVTITCSCGRIRANVPCDAGGSNSDAIQETSIIQKLPVPLQPVDANGKKVPLGQRKLMCNEECLKLERKRVLADAFEITTPNLDSLHFGENSGASELLADMMRRDPKWVLSVEERCKFLVLGKSKGTTHDLKVHVFCPMLKDKRDAVMVIAERWKLAVNAAGWEPKCFIVVHVTPKSRAPSRVLGVKGTTTIHAPLPPAFDPLVDMDPRLVVSLPDLPRDADISALVLRFGGECELVWLNNKNALAVFSDPARATAAMRRLDHGTVYQGAIVVVPNIGASVASSATNAWGGGALAALKGNPWKKAVVQEPGWREDSWDDKEWTTGSAFWKKEDPIPASLNPWSVLHPSSSESSVVTKLEPHDGGSNLEGKHEGNFDASEVYDDVVDDWEKAFANEWDEVDKK. 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g07110 1024 CDD NF-X1-zinc-finger 443 495 - -
Seca11g07110 1024 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 28 942 IPR034078 GO:0003700
Seca11g07110 1024 ProSiteProfiles Zinc finger PHD-type profile. 70 130 IPR019787 -
Seca11g07110 1024 Pfam NF-X1 type zinc finger 235 252 IPR000967 GO:0005634|GO:0008270
Seca11g07110 1024 Pfam NF-X1 type zinc finger 415 426 IPR000967 GO:0005634|GO:0008270
Seca11g07110 1024 Pfam NF-X1 type zinc finger 182 197 IPR000967 GO:0005634|GO:0008270
Seca11g07110 1024 Pfam NF-X1 type zinc finger 351 374 IPR000967 GO:0005634|GO:0008270
Seca11g07110 1024 Pfam NF-X1 type zinc finger 563 578 IPR000967 GO:0005634|GO:0008270
Seca11g07110 1024 Pfam NF-X1 type zinc finger 299 316 IPR000967 GO:0005634|GO:0008270
Seca11g07110 1024 Pfam NF-X1 type zinc finger 510 526 IPR000967 GO:0005634|GO:0008270
Seca11g07110 1024 Pfam NF-X1 type zinc finger 453 470 IPR000967 GO:0005634|GO:0008270
Seca11g07110 1024 MobiDBLite consensus disorder prediction 976 996 - -
Seca11g07110 1024 CDD NF-X1-zinc-finger 347 395 - -
Seca11g07110 1024 ProSitePatterns Zinc finger PHD-type signature. 73 127 IPR019786 -
Seca11g07110 1024 SMART znfxneu3 235 254 IPR000967 GO:0005634|GO:0008270
Seca11g07110 1024 SMART znfxneu3 563 592 IPR000967 GO:0005634|GO:0008270
Seca11g07110 1024 SMART znfxneu3 510 528 IPR000967 GO:0005634|GO:0008270
Seca11g07110 1024 SMART znfxneu3 453 472 IPR000967 GO:0005634|GO:0008270
Seca11g07110 1024 SMART znfxneu3 415 445 IPR000967 GO:0005634|GO:0008270
Seca11g07110 1024 SMART znfxneu3 357 376 IPR000967 GO:0005634|GO:0008270
Seca11g07110 1024 SMART znfxneu3 299 318 IPR000967 GO:0005634|GO:0008270
Seca11g07110 1024 SMART znfxneu3 601 622 IPR000967 GO:0005634|GO:0008270
Seca11g07110 1024 SMART znfxneu3 180 198 IPR000967 GO:0005634|GO:0008270
Seca11g07110 1024 ProSiteProfiles Zinc finger RING-type profile. 73 128 IPR001841 -
Seca11g07110 1024 CDD RING-CH-C4HC3_NFX1-like 72 128 - -
Seca11g07110 1024 SUPERFAMILY RING/U-box 72 133 - -
Seca11g07110 1024 CDD NF-X1-zinc-finger 225 273 - -
Seca11g07110 1024 MobiDBLite consensus disorder prediction 1 45 - -
Seca11g07110 1024 MobiDBLite consensus disorder prediction 1 50 - -
Seca11g07110 1024 CDD NF-X1-zinc-finger 500 548 - -
Seca11g07110 1024 CDD NF-X1-zinc-finger 289 332 - -
Seca11g07110 1024 CDD NF-X1-zinc-finger 161 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g07110 Seca-Chr11 171194645 171197719 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Seca11g07110 zf-NF-X1 0.09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g07110 K12236 - gmx:106799700 1710.66