Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g07107 ATGGCGATAGTGCCTCACAAGCACAAACACAGACACAGACACACACACTCTTTTCAGTTACTCCTCACGCTTCTCCTATTTCTTGGAATTCGTGAATCACAAGCAGATCTCACTTCCGAGCGAGCTGCATTGCTCTCTCTCCGTTCTGCCGTCGGCGGTCGAACTCTTCTCTGGAATCTCACCAACCAGAGCCCTTGCAACTGGGCCGGCGTCCAATGCGAACACGACCATATCGTCGAGCTTCACCTTCCCGGCGTTGCTCTTTCCGGCCAATTACCTACCGGAATATTCAGCAACCTCACACACCTCCGCACTCTCAGCCTCCGTTTCAACGCACTCACAGGTTCACTCCCTTCAGATCTGGCTTCCTGCGTCAACCTCAGGAACCTTTACTTGCAGCGGAACTTACTCTCCGGTGAAATCCCACAGTTCCTTTTCCGGTTACCGGACTTAGTTCGCCTCAACATGGCCTTCAACAACTTCTCCGGTCCCTTTCCAACCGATTTCAACAACTTGCCCAGGCTCAAAACACTCTTCCTCGAAAATAACCAGATTTCGGGTCCTATCCCTGAATTGAACAAGCTCCAACTGGATCAGTTCAATGTCTCTAACAATTTGCTCAATGGCTCTGTTCCCCTCAAGCTCCAGACATTCTCTCAGGATTCCTTTCTGGGGAATTCCCTCTGTGGCAAACCCCTCTCTCTCTGCCCTGGAACCACTGATGCTTCTTCTCCTTCTTCTTCGGTTGACAATGCTGGAGGAAGCACCTCCCACAAGAAGAAGAACAAGTTGTCTGGCGGTGCCATTGCCGGAATCGTTATTGGATCCGTGGTTGGTCTTCTGTTGGTTGCTTTCCTTTTGATCCTTTTGTTTAGGAAAAAGAGTAGCAAGAAGACAACTGCTGTTGAAGTTGCAGCAGTGAAGCATCCTGAATCGGAAGTTCCTTCTGAGAAGCCCCTTTACGACGTGGAGAACGGCAATGGGCACTCCGCGGCAGCGGCAGCGACAGCCGCTGCGGCGGCTGTGGCTGCGGGTTCTACCAACAAGGTTGAAGCCAATGGTGGTGGAGCGAAAAAGTTGGTGTTTTTTGGAAATTCGGCTAGGGGGTTTGATCTGGAGGATTTGCTGAGAGCTTCGGCGGAGGTGTTGGGGAAAGGGACTTTCGGAACGGCGTATAAGGCGGTGTTGGAGTCAGGGCCGGTGGTGGCTGTGAAAAGGTTGAAGGATGTTACCATTTCGGAGAAGGAGTTCAAGGACAAGATTGAATCTGTGGGAGCAATGGATCATCAAAATTTGGTTCCTCTGAGGGCATACTATTTCAGCAGAGATGAGAAGCTGCTTGTTTATGATTACATGCCAATGGGAAGCTTATCTGCGCTTTTGCATGGAAACAAAGGAGCAGGTAGGACACCACTGAATTGGGAAATCAGATCAGGCATTGCACTTGGAGCTGCTCGTGGCATCGAGTACCTACATTCACAAGGGCCTAATGTTTCCCATGGAAATATAAAGTCATCTAACATCCTCTTAACAAAATCCTATGATGCCAGAGTATCTGATTTTGGCCTTGCACACCTTGTTGGTCCTTCCTCCACCCCCAACCGTGTTGCTGGCTACCGTGCTCCTGAGGTAACTGATCCTCGCAAAGTATCTCAAAAGGCAGATGTCTACAGCTTTGGTGTGTTGTTGTTGGAACTTCTAACTGGGAAGGCACCTACTCACGCTCTCCTAAATGAGGAAGGAGTAGACCTACCCAGATGGGTTCAATCCGTGGTTAGAGAAGAGTGGACTTCTGAGGTATTTGATCTTGAGCTCCTTAGGTATCAGAATGTTGAAGAGGAGATGGTTCAGTTGTTGCAACTTGCAGTTGATTGTGCAGCACCATACCCTGATAAGCGCCCTTCAATGTCTGAAGTCACAAGGAGCATACAAGAGTTACGTCGGTCTAGCTTGAAAGAAGACCAAGACCAAATCCAACATGATCAGACCAATGATATAGAATTATAG 2007 0.4913 MAIVPHKHKHRHRHTHSFQLLLTLLLFLGIRESQADLTSERAALLSLRSAVGGRTLLWNLTNQSPCNWAGVQCEHDHIVELHLPGVALSGQLPTGIFSNLTHLRTLSLRFNALTGSLPSDLASCVNLRNLYLQRNLLSGEIPQFLFRLPDLVRLNMAFNNFSGPFPTDFNNLPRLKTLFLENNQISGPIPELNKLQLDQFNVSNNLLNGSVPLKLQTFSQDSFLGNSLCGKPLSLCPGTTDASSPSSSVDNAGGSTSHKKKNKLSGGAIAGIVIGSVVGLLLVAFLLILLFRKKSSKKTTAVEVAAVKHPESEVPSEKPLYDVENGNGHSAAAAATAAAAAVAAGSTNKVEANGGGAKKLVFFGNSARGFDLEDLLRASAEVLGKGTFGTAYKAVLESGPVVAVKRLKDVTISEKEFKDKIESVGAMDHQNLVPLRAYYFSRDEKLLVYDYMPMGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAPYPDKRPSMSEVTRSIQELRRSSLKEDQDQIQHDQTNDIEL. 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g07107 668 Gene3D Transferase(Phosphotransferase) domain 1 452 667 - -
Seca11g07107 668 MobiDBLite consensus disorder prediction 238 262 - -
Seca11g07107 668 Pfam Leucine rich repeat N-terminal domain 39 73 IPR013210 -
Seca11g07107 668 Gene3D Ribonuclease Inhibitor 39 147 IPR032675 -
Seca11g07107 668 ProSitePatterns Protein kinases ATP-binding region signature. 383 405 IPR017441 GO:0005524
Seca11g07107 668 SUPERFAMILY Protein kinase-like (PK-like) 381 645 IPR011009 -
Seca11g07107 668 Gene3D Phosphorylase Kinase; domain 1 343 451 - -
Seca11g07107 668 Pfam Leucine rich repeat 91 137 IPR001611 GO:0005515
Seca11g07107 668 Pfam Protein kinase domain 380 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g07107 668 ProSiteProfiles Leucine-rich repeat profile. 174 196 IPR001611 GO:0005515
Seca11g07107 668 FunFam Probable inactive receptor kinase At1g48480 452 655 - -
Seca11g07107 668 SUPERFAMILY L domain-like 55 216 - -
Seca11g07107 668 ProSiteProfiles Protein kinase domain profile. 377 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g07107 668 CDD STKc_IRAK 383 646 - -
Seca11g07107 668 FunFam Probable inactive receptor kinase RLK902 37 193 - -
Seca11g07107 668 FunFam pollen receptor-like kinase 1 346 451 - -
Seca11g07107 668 Gene3D Ribonuclease Inhibitor 150 236 IPR032675 -
Seca11g07107 668 PANTHER OS05G0588300 PROTEIN 20 652 - -
Seca11g07107 668 MobiDBLite consensus disorder prediction 646 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g07107 Seca-Chr11 171164229 171167383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g07107 36 647 Receptor kinase-like Gene Family AT1G48480 65.428 0.0 804
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca11g07107 Pkinase 1.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g07107 - - gmx:100818955 1017.3