Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g07092 ATGTGGATGGTGGGTTACAATGAAGTTGGTGGTGAGTTCAACTGTAACAACATGGCTGATTATCCATTCAATGGAAGGAAACTCAGGCCTCTGATGCCAAGGCCAGTGACTACTTCTCCTAACAACACTTCAGCTACAAACACTCCTTGCTTGAACCGCATTCATGGCCACGATTTCTTTTCACAATATCACAACCTGGTTTTTGTTTTAGCAGCAGCATCAGTGGCAGAGCAGAACAAGAGAGAGTTCAACACTCCACCAGTTGTGGTGAGCTCAAGGTGGAATCCAACCCCAGAACAGCTAAGAGCACTGGAAGAATTGTATAGGAGAGGAACAAGAACACCATCTGCGGAACAAATCCAGCAAATCACTGCACAGCTTAGAAGATATGGAAAAATTGAAGGGAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCCAGAGAAAGGCAGAAACGCCGCCGTCAAATGGAATCAGCTGCTGAGGGTCACACCGGTGACTTTGATAATACTACTCTTGAAATTGAAAAGAATAATAAGGACTTAGGTAAAAAAAACTCACCATATTCTACAGGCGCAAGTAGGACAGTGTTTGAAGTTGAACAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTACTCTTGCAGAGGAATCTGTTTCAATTCAAAGGGCAGCAAAAGCAGCAATTGCAGAGTGTAGAACAGATGGATGGCTCCAATTCGATGAAGGAGAATTACAGCAAAGAAGAAACTTTATGGAAAGGAATGCCACGTGGCATATGATGCAGATATCTTGTCCTCACCCTCCTACAGTTACCCCACACCACCACCTCATAAACACACCTCCTAATAACAGTAACACCTCTACAACTAGCATGGCCTCCACAACCACAGTAGCAGCTACAGTAATGGACCCAAAACTCATTAAGACCCATGATCTCAGCTTCTTCATTTCACCTCACACTCACAGAGAAAATGGTATTGTCCACTTAAGCAATATCACCACCGAGGGTGATAATAATTGTGTGGAATCTCAAACCCTTCAACTTTTCCCAATAAGGAATGGGGATGGTAGCAGTGATAACATTAACCAACAAAACGAGACAGAGATATCAGATTCAGCAATGAATGCACCGAGCCAGTTTTTTGAGTTCCTTCCATTGAAGAACTGA 1173 0.4322 MWMVGYNEVGGEFNCNNMADYPFNGRKLRPLMPRPVTTSPNNTSATNTPCLNRIHGHDFFSQYHNLVFVLAAASVAEQNKREFNTPPVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAAEGHTGDFDNTTLEIEKNNKDLGKKNSPYSTGASRTVFEVEQTKNWAPSTNCSTLAEESVSIQRAAKAAIAECRTDGWLQFDEGELQQRRNFMERNATWHMMQISCPHPPTVTPHHHLINTPPNNSNTSTTSMASTTTVAATVMDPKLIKTHDLSFFISPHTHRENGIVHLSNITTEGDNNCVESQTLQLFPIRNGDGSSDNINQQNETEISDSAMNAPSQFFEFLPLKN. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g07092 390 FunFam WUSCHEL-related homeobox 4 91 158 - -
Seca11g07092 390 SUPERFAMILY Homeodomain-like 92 158 IPR009057 -
Seca11g07092 390 Gene3D - 90 151 - -
Seca11g07092 390 MobiDBLite consensus disorder prediction 150 170 - -
Seca11g07092 390 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 78 384 IPR044555 GO:0003700|GO:0099402
Seca11g07092 390 Pfam Homeodomain 92 151 IPR001356 GO:0003677
Seca11g07092 390 SMART HOX_1 89 156 IPR001356 GO:0003677
Seca11g07092 390 CDD homeodomain 93 153 IPR001356 GO:0003677
Seca11g07092 390 ProSiteProfiles 'Homeobox' domain profile. 97 152 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g07092 Seca-Chr11 171037806 171040980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g07092 1 390 Wox Gene Family AT3G18010 39.659 1.89e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca11g07092 Homeodomain 9.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g07092 - - gmx:100777274 560.451