LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g07082	ATGAAGAACATTCTTAAGAAGCTTCATATCATGTCTAATCAATCAGAAGATGCACAAGGGTCTACTACTCCATCAAAGAGCAACAAGTCCAATGATGGTTCGTCTTCATCCCCTACTGCTAAGAAGCTTTCCAACTGGTTGCATTCAGTTTCTAATAGGCAGAGTCCTAGTCCTCCATCTCCCAACCTGACAAGAGGAGAAAGAGTGGAGCCATCTGATACAGTGAGCAGTGGTGATTTAGATATTGTTTCTGAGTCAGTGAGGCGTGATTCAGGGTCTAGCACTTCGAGGGATCCTGAAGTGGAAGAAGAATATCAGATACAACTGGCTTTAGAGCTGAGTGCAAAGGAGGATCCTGAGGCTGTACAGATTGAAGCTGTTAAGCAGATCAGTTTGGGATCTTGTGACCCTGATAATACACCAGCTGAAGTTGTGGCCTACCGGTACTGGAATTACAATGCTCTTGGTTATGATGACAAGATCTCAGATGGTTTCTATGATCTGTATGGAATCTTAACTGAGTCAACCTCCACAAGAATGCCTTCTCTTATAGATCTGCAAGAAACACCAACCTCAGAAATTGTCACATGGGAAGCAATCTTGGTCAATAGGGCTGCTGATTCCAATTTGTTGAAACTTGAGCAAAAAGCCCTGGAGCTGGTGGTCAATTCAAGAAAAGATTTTGAAATAGTTATAGATAGTAATTTGGTGCGCAAGCTTGCAATAATAGTGGCTGACTATATGGGTGGATCAGTTGAAGATCCTGAAAGCATGTCAAGAGCATGGAGGAGTCTTAGTTACAGTCTAAAAGCAACCCTCGGTAGCATGGTTTTGCCACTTGGTTCACTGACCATTGGATTGGCTCGGCATCGTGCATTGTTATTTAAGGTTTTAGCTGATGATTTGGGCATCCCATGTCGACTGGTGAAGGGACTGCAGTATACAGGTTCTGATGATGTAGCGATGAACTTTGTCAAGATTGATGATGGAAGGGAGTACATTGTTGATCTCATGGCTGCTCCTGGAACACTTATTCCATCTGATGCAACTGGATCTCATATCGAGTATGATGAATCTTCTTTTGTAGCCACTCCTTCATCAAGAGACCTTGATTCGTCTCATATTGCATCATTCAGCAGTGGGGTGGGAAGTTCATCTGAAGAAACTTCAGACTTTGGGACTCTTGAGAGAGGAAACAGGTCAAAACATTTTGTGTATTCAGGGAAAGAATCTGATGTAAGCAGGCCAACTGCTGGCAAGGAAGAATTAAAGAAACCGTTAAATGAATTTAAAAATATCCCTAATGTAGATAAGGTCAGAGCAAGGGAATCTCTTAGCAGACCTAATTATCCATATATGCATGGAAGATCTCCTTCTTGGACTGAAGGGATCAGTTCCCCTGCAGTACATAAAATGAAAGTCAAAGATGTTTCCCAATATATGATGGATGCTGCAAAGGAGAACCCTAACTTAGCTCAAAAACTTCATGATGTTTTACTTGAAAGTGGTGTTGTTGCTCCTCCAAACTTATTTTCTGAAATTTATCATGAGCAGTTAAGTTCCATAACAGAGGCCAGTTTTTCAACTGAAGAAAAAGATGAATATAAACAGGGAAATGTACAGCAGGAAACTAAGGTTGCAGATAATCTAGGTCCTCGATTTTTGCCTCCATTACCTCACCTCAGAGTTCATCCCAAAGCAAGTCCTAGCAGTCAGCTGGAGCATCCAAAGCCTGTAGAAGGTTTAGGAACCAGCCTTCCTCTTGATACAAGGGAAGCTTCTGAACAGCACATGTCATCCCAGGCTGAAGCAACTCAAGTAAAGTATGGGAAAAATGTCCCAGTTGCTGCTGCCGCGGCTGCTGCTGCTGCTGCTGTTGCATCTTCTATGGTAGTTGCTGTGGCCAAGTCAGGCACTGACTCAAATTTTGATATTCCTGTAGCAGCAGCTGCTACTGCTACTGCTGCAGCTGTTGTAGCAACCACTGCTGCTGTCAGTAAACAGTATGAGCAGGGCAGCCGAAGTGATGGAGATACAGAGAGTACTGGTTATGAGCCGAAGGGTAGTGGTGACGGAGAGCATAATGCTTTAGGAGCAAACTCAGAAGGCGAGAGAAAATCTGATAGATCAGTAAGTAATGATAGCACAAAATCTGATTCTGCACTAGATGATGTTGCCGAGTATGACATTCCATGGGAGGAAATCAAGATGGGTGAGCGTATCGGACTTGGATCATATGGTGAAGTGTACCGTGGTGATTGGCATGGAACTGAGGTTGCTGTAAAGAGGTTTCTAGATCAAGATATCTCTGGTGAATCACTTGAAGAATTCAAAAGTGAGGTCCAAATAATGAAAAGATTGAGGCATCCAAACGTTGTTCTCTTCATGGGAGCTGTAACTCGACCTCCAAATCTTTCAATTGTTACTGAATTTCTTCCTAGAGGGAGTTTGTATAGATTAATTCACCGACCTAACAATCAATTAGATGAGCGAAGGCGGTTGAGGATGGCCCTGGATGCTGCTCGAGGAATGAATTATTTGCACAACTGCTCTCCAGTGATAGTGCATCGTGATTTGAAGTCCCCAAATCTTCTTGTTGACAAAAATTGGGTTGTAAAGGTATGTGATTTTGGCTTATCACGAATGAAGAATAGTACTTTCCTTTCTTCCAGATCAACTGCAGGAACAGTAAGCTATCATAATTTTTATTTCCTTATTACAATAGCTGTTTTAAAATCTGTCCATTGTGATTTATTTATTCTTTCATCCTCTTATTTGCATTGTTGCATATTTTAA	2796	0.4199	MKNILKKLHIMSNQSEDAQGSTTPSKSNKSNDGSSSSPTAKKLSNWLHSVSNRQSPSPPSPNLTRGERVEPSDTVSSGDLDIVSESVRRDSGSSTSRDPEVEEEYQIQLALELSAKEDPEAVQIEAVKQISLGSCDPDNTPAEVVAYRYWNYNALGYDDKISDGFYDLYGILTESTSTRMPSLIDLQETPTSEIVTWEAILVNRAADSNLLKLEQKALELVVNSRKDFEIVIDSNLVRKLAIIVADYMGGSVEDPESMSRAWRSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADDLGIPCRLVKGLQYTGSDDVAMNFVKIDDGREYIVDLMAAPGTLIPSDATGSHIEYDESSFVATPSSRDLDSSHIASFSSGVGSSSEETSDFGTLERGNRSKHFVYSGKESDVSRPTAGKEELKKPLNEFKNIPNVDKVRARESLSRPNYPYMHGRSPSWTEGISSPAVHKMKVKDVSQYMMDAAKENPNLAQKLHDVLLESGVVAPPNLFSEIYHEQLSSITEASFSTEEKDEYKQGNVQQETKVADNLGPRFLPPLPHLRVHPKASPSSQLEHPKPVEGLGTSLPLDTREASEQHMSSQAEATQVKYGKNVPVAAAAAAAAAAVASSMVVAVAKSGTDSNFDIPVAAAATATAAAVVATTAAVSKQYEQGSRSDGDTESTGYEPKGSGDGEHNALGANSEGERKSDRSVSNDSTKSDSALDDVAEYDIPWEEIKMGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDISGESLEEFKSEVQIMKRLRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLIHRPNNQLDERRRLRMALDAARGMNYLHNCSPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKNSTFLSSRSTAGTVSYHNFYFLITIAVLKSVHCDLFILSSSYLHCCIF.	932

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g07082	931	Gene3D	Transferase(Phosphotransferase) domain 1	814	919	-	-
	Seca11g07082	931	MobiDBLite	consensus disorder prediction	83	103	-	-
	Seca11g07082	931	ProSitePatterns	Protein kinases ATP-binding region signature.	741	762	IPR017441	GO:0005524
	Seca11g07082	931	SUPERFAMILY	Protein kinase-like (PK-like)	724	899	IPR011009	-
	Seca11g07082	931	Gene3D	Phosphorylase Kinase; domain 1	728	812	-	-
	Seca11g07082	931	MobiDBLite	consensus disorder prediction	1	103	-	-
	Seca11g07082	931	ProSiteProfiles	Protein kinase domain profile.	735	931	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g07082	931	MobiDBLite	consensus disorder prediction	667	722	-	-
	Seca11g07082	931	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	386	899	-	-
	Seca11g07082	931	SMART	serkin_6	735	926	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g07082	931	Pfam	Protein tyrosine and serine/threonine kinase	735	886	IPR001245	GO:0004672\|GO:0006468
	Seca11g07082	931	MobiDBLite	consensus disorder prediction	698	713	-	-
	Seca11g07082	931	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	854	866	IPR008271	GO:0004672\|GO:0006468
	Seca11g07082	931	MobiDBLite	consensus disorder prediction	8	81	-	-
	Seca11g07082	931	MobiDBLite	consensus disorder prediction	589	605	-	-
	Seca11g07082	931	CDD	STKc_MAP3K-like	741	899	-	-
	Seca11g07082	931	MobiDBLite	consensus disorder prediction	561	605	-	-
	Seca11g07082	931	Pfam	Ethylene-responsive protein kinase Le-CTR1	142	345	-	-
	Seca11g07082	931	FunFam	Serine/threonine-protein kinase isoform 1	726	813	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g07082	Seca-Chr11	170951020	170959221	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g07082	1	899	MAP Kinase Kinase Kinase	AT1G73660	61.848	0.0	998

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_CTR1-DRK-2	Seca11g07082		EDR1	1.9e-76	CL0125

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g07082	-		-	gmx:100778331	1460.28