Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g07081 ATGGACCCAATTTCGATCCCCCCTCCTCCGCCCGTCCTCACCACCGTCCCGTTCACCATAGAACCCGACAATCACGTACCTCCGACCGCCAACGACATCCCCAACCTCACTGCTGCTACGAACCAGAACCACCCTCCTTATGCTGAGATGATATACAGAGCAATAGAGGCGCTGAAGGAGAAGGATGGGTCGAGCAAGAGAGCCATAGGAAAGTACATAGAGCAAGTCTACAAGGACAACCTTCCACCCACTCACTCCTCCTTGTTGACTCACAACCTCAAGCGCTTAAAGTCCACTGGTCTTCTTGTTATGGTCAAAAAGTCTTACAAGCTCCCTTCCTCTCTCCCTCCACCTCCTATTCCTACTCCTAGATCTGATCTCCCTCCCACCCAACAAACCCAAAGGGGCCGCGGTCGGCCCCCAAAGCCCAAACCCGATCCCCAGCAAAATGCTGAGCCCGTGTTTGTTGCGCTAGGCCTTGCGGATGACCCGGCACCACCACCACCTACTACAACTGATCTCAACAAGAGAGGCCCGGGCCGTCCTCCAAAGATTGGAGTTGTCGGTGTGGGCCCGGCGGTGCCTGGTAGAAGAGGGCGCCCACCCGGGACGGTCAGATCTAGGTTGCCTAAGAGGCCCGGTCGTCCTCCCAAGCCCAAATCCGTGTCCGCAATCTCGAATGGGCTCAAGCGACGTCCTGGCCGTCCTCCCAAACTCCAATCGCAGCCCACCGTCATCCCCTTCGCCGCTCCTGCCCCTTCTCTTGATGCCAGCGTGGCACCGACCGTACCCGTTGGATCTCCGAGGCCCAGAGGGCGGCCCAGGAAGAATGCCACTGCAGTGCCCGGTGTGGGAGCTCCAGCACCACCTATTACCGTTCCGGTGATGAGGCAGGGTCGTCCTCCGAAGCTTCCTGTAGGGAGGCCCAAGAATTCCACTGGAAGGCCCGTGGGTCGTCCAAAGGGAGCTATAGCTGCTACTTCAGCGCAAAAGGTTGCTAATGAAGATCTAAAAAGGAAACTTGAATACTTTCAATCAAAAGTGAAGGAATCTCTTGGTGTGCTTAAGCCTTATTTCAACCATGAAAGTCCAGTGACTGCAATTGCAGCAATCCAAGAGTTGGAAATACTGTCAACTTTGGACCTTAAAGCTCCAATAGGAGATGTAACACAGCAATTTCCACAACAGCAACAGCTACAAGCTGAGCAACAGCCACAGGCACAAATGTATGAACAGCAATATCTCCAGATACCAGCGCAGGCACAGCTGCAGCAACTTTTTCAATCACACACATCAGCCCCAAGCTAG 1308 0.5459 MDPISIPPPPPVLTTVPFTIEPDNHVPPTANDIPNLTAATNQNHPPYAEMIYRAIEALKEKDGSSKRAIGKYIEQVYKDNLPPTHSSLLTHNLKRLKSTGLLVMVKKSYKLPSSLPPPPIPTPRSDLPPTQQTQRGRGRPPKPKPDPQQNAEPVFVALGLADDPAPPPPTTTDLNKRGPGRPPKIGVVGVGPAVPGRRGRPPGTVRSRLPKRPGRPPKPKSVSAISNGLKRRPGRPPKLQSQPTVIPFAAPAPSLDASVAPTVPVGSPRPRGRPRKNATAVPGVGAPAPPITVPVMRQGRPPKLPVGRPKNSTGRPVGRPKGAIAATSAQKVANEDLKRKLEYFQSKVKESLGVLKPYFNHESPVTAIAAIQELEILSTLDLKAPIGDVTQQFPQQQQLQAEQQPQAQMYEQQYLQIPAQAQLQQLFQSHTSAPS. 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g07081 435 Pfam linker histone H1 and H5 family 44 107 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca11g07081 435 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 43 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca11g07081 435 Gene3D - 40 119 IPR036388 -
Seca11g07081 435 SMART h15plus2 41 108 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca11g07081 435 PANTHER HISTONE H1 31 239 - -
Seca11g07081 435 SUPERFAMILY "Winged helix" DNA-binding domain 41 118 IPR036390 -
Seca11g07081 435 CDD H15 44 108 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca11g07081 435 PRINTS AT-hook-like domain signature 266 276 IPR017956 GO:0003677
Seca11g07081 435 PRINTS AT-hook-like domain signature 193 204 IPR017956 GO:0003677
Seca11g07081 435 PRINTS AT-hook-like domain signature 134 144 IPR017956 GO:0003677
Seca11g07081 435 MobiDBLite consensus disorder prediction 110 330 - -
Seca11g07081 435 SMART AT_hook_2 230 242 IPR017956 GO:0003677
Seca11g07081 435 SMART AT_hook_2 176 188 IPR017956 GO:0003677
Seca11g07081 435 SMART AT_hook_2 314 326 IPR017956 GO:0003677
Seca11g07081 435 SMART AT_hook_2 268 280 IPR017956 GO:0003677
Seca11g07081 435 SMART AT_hook_2 134 146 IPR017956 GO:0003677
Seca11g07081 435 SMART AT_hook_2 195 207 IPR017956 GO:0003677
Seca11g07081 435 MobiDBLite consensus disorder prediction 112 126 - -
Seca11g07081 435 FunFam Histone H1.2 40 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g07081 Seca-Chr11 170938851 170941859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g07081 50 116 Single Myb Histone (SMH) Gene Family AT1G49950 46.269 2.65e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g07081 - - aprc:113856313 385.185