Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g07080 ATGGGTGGTGGAGGGACAATCGCAGATGGGATTCGTCGCTTGTTTCAAAGACGTGCTCCTGTTACTTCTTCTTCTTCTACTAAGTCTCGTTCAGATGAAGACAATAACAATGCCAATAATGACCGCGTTTTCGTGAGAGATTTGCGGGCACAACTGGCATCTATTCCCACCCACGATCACGATCAAGATCACCTAACCCATTTCCCCATTCACGATATCTCTCTCTCTCCCTTGAAGCCCATCAAAGTCCCTACTCACTTCTTCGGACCTTCTTCCATGGATCCTCACAAAAAGGGCGCGCCAGAAACAGAGTTTTTTACCGAGTATGGAGAGGCAAGTCAATACCAGATTCAAGAGGTCGTTGGAAAAGGAAGTTATGGTGTTGTGGGTTCTGCCATTGACACTCATACTGGTGAAAAGGTTGCCATCAAGAAAATTAATGATGTTTTTGAGCATGTTTCGGATGCCACACGGATCCTAAGAGAAATTAAACTTTTGAGGTTGCTCCGGCATCCTGATATTGTAGAGATTAAGCATATTATGCTCCCTCCTTCGCGGCGAGAGTTCCAGGATATATATGTTGTGTTTGAGTTAATGGAATCTGATCTTCATCAAGTAATTAAGGCTAATGATGATCTTACTCCTGAGCACCACCAATTTTTCTTGTACCAACTTCTTCGGGGCCTTAAATATATACATACAGCAAATGTGTTTCATCGTGATTTGAAGCCTAAAAATATCCTTGCTAATGCTGATTGCAAACTAAAGATATGTGATTTTGGACTTGCTCGAGTTTCTTTTAATGATGCTCCATCAGCTATATTCTGGACTGACTATGTTGCTACCCGGTGGTACCGTGCACCTGAACTATGTGGTTCTTTTTTCTCAAAATATACCCCTGCAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGATCACTGGGAAGCCATTGTTTCCTGGGAAAAATGTGGTGCACCAATTGGATCTCATGACTGATTTGCTTGGCACTCCTCCTCCTGAGTCCATTGCAAGGATTCGCAATGAGAAAGCTAGAAGGTATCTTAATAACATGCGAAAAAAGCAACCAATTCCGTTATCCCAGAAATTTCCAAATGCAGATCCTTTGGCTCTTCGTTTACTGGAGCGGCTACTTGCATTTGATCCTAAAGATCGTCCAACAGCTGAAGAGGCACTAGCTGATCCTTATTTCCACGGTTTGGCAAACGTAGATCGTGAACCATCCACTCAACCCATTTCAAAACTTGAATTCGAGTTTGAGAGAAGGAAATTGACCAAAGATGATGTTAGAGAGTTAATTTATCGAGAGATTTTAGAGTATCATCCCCAAATGCTCCAGGAGTATCTTCGTGGTGGAGAGGAAACCAGCTTCATGTATCCAAGTGGGGTTGATCGGTTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGGCAAAGGTGAACGAAGCACTCCATTGCAGAGACAACATGCCTCCTTACCTAGAGAGCGAGTTTGCACTTCCAAAGATGAAAATAATGAAAACAAAGATTTTGAAAGGCCAACTGGATCTAATCTTCATAGTCCTCCAGGGCCAAATGGGACAAATGCTGGAAACTCAGATGCTCAAAATGCACCCTCCAATTCAAACTACAGTACACGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCTTCAAAGTGTATAGGTGTGAAACAAAATAAAGATACAGAGGAGCCAATTATGGAGGTCAATGATGAGGCAGTGGATGGATTGACAGATAACGTTGCTGCCCTCCAAGCTTAG 1809 0.4268 MGGGGTIADGIRRLFQRRAPVTSSSSTKSRSDEDNNNANNDRVFVRDLRAQLASIPTHDHDQDHLTHFPIHDISLSPLKPIKVPTHFFGPSSMDPHKKGAPETEFFTEYGEASQYQIQEVVGKGSYGVVGSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFQDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMITGKPLFPGKNVVHQLDLMTDLLGTPPPESIARIRNEKARRYLNNMRKKQPIPLSQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFHGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRGGEETSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRQHASLPRERVCTSKDENNENKDFERPTGSNLHSPPGPNGTNAGNSDAQNAPSNSNYSTRSLLKSASISASKCIGVKQNKDTEEPIMEVNDEAVDGLTDNVAALQA. 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g07080 602 MobiDBLite consensus disorder prediction 504 523 - -
Seca11g07080 602 FunFam Mitogen-activated protein kinase 430 452 - -
Seca11g07080 602 MobiDBLite consensus disorder prediction 1 43 - -
Seca11g07080 602 SMART serkin_6 115 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g07080 602 ProSiteProfiles Protein kinase domain profile. 115 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g07080 602 MobiDBLite consensus disorder prediction 528 556 - -
Seca11g07080 602 CDD STKc_TDY_MAPK 114 451 - -
Seca11g07080 602 Gene3D Phosphorylase Kinase; domain 1 131 452 - -
Seca11g07080 602 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 114 458 - -
Seca11g07080 602 Pfam Protein kinase domain 115 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g07080 602 MobiDBLite consensus disorder prediction 18 33 - -
Seca11g07080 602 MobiDBLite consensus disorder prediction 485 556 - -
Seca11g07080 602 FunFam Mitogen-activated protein kinase 201 429 - -
Seca11g07080 602 Gene3D Transferase(Phosphotransferase) domain 1 201 429 - -
Seca11g07080 602 FunFam Mitogen-activated protein kinase 104 209 - -
Seca11g07080 602 SUPERFAMILY Protein kinase-like (PK-like) 111 411 IPR011009 -
Seca11g07080 602 ProSitePatterns Protein kinases ATP-binding region signature. 121 145 IPR017441 GO:0005524
Seca11g07080 602 ProSitePatterns MAP kinase signature. 150 253 IPR003527 GO:0004707|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g07080 Seca-Chr11 170926580 170931107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g07080 100 602 MAP Kinase Gene Family AT3G18040 82.574 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca11g07080 Pkinase 6.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g07080 - - gmx:100780831 979.548