Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g07067 ATGGAAAGCCAGAAGTTGAGAAATCTGAATTTCACTTTGATGGTTTCAGATCCAAAGCAGGAGGTTCAGGCACAGGCTGTTGAGGCTGAGCCCAAAGTGAAAGATAAGGAAATTCCTTCTGTTCAAGAAGAAGAAGAAGAGCCGGAGTTGATGAAAAGACACTTGAATGTTGTGTTTATTGGCCATGTCGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGACAGGACCATCCAAAAATATGAGAAGGAAGCTAAGGACAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGATACAAATGAGGAGGAGAGGATAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAGACTGAGACAACAAGGTTCACCATTTTGGATGCACCTGGTCACAAAAGCTATGTTCCTAATATGATCAGTGGTGCTTCTCAAGCTGATATTGGAGTGTTGGTAATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAGACTCGTGAACATGTCCAGCTTGCAAAAACACTGGGTGTGGCGAAGCTACTTGTTGTTGTCAATAAAATGGATGATCCTACAGTAAACTGGTCAAAAGAAAGATATGATGAAATTGAGTCAAAGATGATTCCGTTTCTAAAGCAATCAGGCTACAATGTAAAGAAAGATGTCCTGTTTTTACCAATATCGGGGCTTGTTGGCTTGAACATGAAAACGAGATTGGATAAAAGCACTTGTTCATGGTGGGATGGGCCTTGCTTATTTGAAGCCCTTGATGCCGTTGAAGTTCCTTTACGAGATCCCAAAGGTCCATTTAGGATGCCCCTACTTGACAAATTCAAAGACATGGGAACTGTTGTCATGGGCAAAGTGGAATCTGGTACTATTCGCGAGGGAGATTCCTTGTTGGTCATGCCAAATAAGGATCATGTAAAAGTCATTGCTATATATATTGATGAAGATCGGGTTAAACGTGCTGGACCTGGTGAAAATTTACGGGTTAGAATATCTGGTGTTGAAGAAGAAGACATATTATCTGGGTTTATCCTGTGTAGTGTTGCAAATCCAATACCCGCAGTTACTGAGTTTGTTGCTCAGTTGGCAATCCTTGAATTGCTGGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCACATCCACTCTGTAGTTGAGGAATGTGAGATTGTTGAGCTCTTGCAACAAATTGATCCAAAGACAAGGAAGCCTATGAAAAAGAAAATTCTCTTCGTGAAGAATGGCGCTGTTGTAGTATGCCGTGTTCAGGTTAATAACATGATATGCATTGAGAAGTTCTCTGATTTTCCACAACTAGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTCGCTGTGGGGAAAGTCACTGGTCTGTGA 1437 0.4189 MESQKLRNLNFTLMVSDPKQEVQAQAVEAEPKVKDKEIPSVQEEEEEPELMKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDDPTVNWSKERYDEIESKMIPFLKQSGYNVKKDVLFLPISGLVGLNMKTRLDKSTCSWWDGPCLFEALDAVEVPLRDPKGPFRMPLLDKFKDMGTVVMGKVESGTIREGDSLLVMPNKDHVKVIAIYIDEDRVKRAGPGENLRVRISGVEEEDILSGFILCSVANPIPAVTEFVAQLAILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDPKTRKPMKKKILFVKNGAVVVCRVQVNNMICIEKFSDFPQLGRFTLRTEGKTVAVGKVTGL. 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g07067 478 CDD eRF3_II 283 364 - -
Seca11g07067 478 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 108 123 IPR031157 -
Seca11g07067 478 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 373 477 IPR009001 -
Seca11g07067 478 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 280 366 - -
Seca11g07067 478 CDD eRF3_C_III 370 478 - -
Seca11g07067 478 MobiDBLite consensus disorder prediction 27 47 - -
Seca11g07067 478 Pfam Elongation factor Tu GTP binding domain 52 254 IPR000795 GO:0003924|GO:0005525
Seca11g07067 478 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 32 276 - -
Seca11g07067 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 287 IPR027417 -
Seca11g07067 478 Pfam Elongation factor Tu C-terminal domain 369 477 IPR004160 -
Seca11g07067 478 FunFam Putative translation elongation/initiation factor family protein 370 478 - -
Seca11g07067 478 SUPERFAMILY Translation proteins 275 368 IPR009000 -
Seca11g07067 478 CDD EF1_alpha 56 276 - -
Seca11g07067 478 Gene3D Translation factors 371 478 - -
Seca11g07067 478 PRINTS GTP-binding elongation factor signature 151 162 IPR000795 GO:0003924|GO:0005525
Seca11g07067 478 PRINTS GTP-binding elongation factor signature 195 204 IPR000795 GO:0003924|GO:0005525
Seca11g07067 478 PRINTS GTP-binding elongation factor signature 135 145 IPR000795 GO:0003924|GO:0005525
Seca11g07067 478 PRINTS GTP-binding elongation factor signature 56 69 IPR000795 GO:0003924|GO:0005525
Seca11g07067 478 PANTHER TRANSLATION FACTOR 44 476 - -
Seca11g07067 478 Pfam Elongation factor Tu domain 2 296 363 IPR004161 GO:0005525
Seca11g07067 478 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 52 281 IPR000795 GO:0003924|GO:0005525
Seca11g07067 478 MobiDBLite consensus disorder prediction 28 47 - -
Seca11g07067 478 Gene3D - 33 276 IPR027417 -
Seca11g07067 478 Gene3D Translation factors 281 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g07067 Seca-Chr11 170774821 170785399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g07067 52 473 Eukaryotic Initiation Factors Gene Family AT5G60390 37.882 1.49e-95 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g07067 K03267 - gmx:100784412 858.211