Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g07064 ATGGCAGAGCTGGATCCGTCCAAAAAAGTAGCCGATAGATATCTGAAGCGTGAAGTCCTTGGTGAAGGTACCTATGGAGTTGTATACAAAGCCATTGATACCCACACAGGACAGACGGTTGCTATTAAGAAAATCCGGCTTGGCAAGCAGAAAGAAGGTGTAAATTTTACAGCTCTTAGAGAAATTAAACTGCTAAAAGAGCTCAAAGACCCTAACATTATTGAGTTGATCGATGCATTCCCACACAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACGGACCTTGAAGCTGTCATCCGAGACCGAAATATTTTCCTTTCACCAGCTGATACAAAATCCTACCTTCAAATGACACTAAAAGGTCTTGCTTTTTGCCACAAGAGATGGGTTTTGCATAGGGATATGAAGCCAAATAATTTGTTGATAGGACCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATGTTTGGAAGTCCAGATAGAAGATTCACTCATCAGGTTTTTGCGCGGTGGTATAGAGCTCCTGAACTATTATTTGGTGCCAAGCAATATGGTTCGGGGGTTGACGTTTGGGCTGCAGCTTGTATATTTGCTGAACTTCTTCTTCGTCGACCATTTTTGCAGGGTTCAAGTGATATTGATCAATTAGGAAAGATTTTTGCAGCATTTGGGACTCCAACACCTTCTCAGTGGCCTGATATGGTATACCTGCCTGATTATGTTGAATACCAATATGTTCCCGCCCCACCTTTGCGTTCTTTATTTCCAATGGCAAGTGAAGATGCTTTAGATCTGTTGTCAAAAATGTTTACATATGATCCAAAATCTAGAATTTCAGTGCAGCAGGCACTAGAGCACAGCTTTAGGTACTTTTCTTCTGCACCTCTGCCTACGGATCCAGATAAGCTCCCTAGACCTGCCCCCAAGAGGGAATCCACAGTTTCTGATTTCAATTTACAGGAGGGTCCTACTGTATTGTCACCTCCAAGGAAGTCTAGGAGAGTGATGCCAGGACGTGATGGATTTGAAGGAAATTCTGTGCAAGCAGATAAGGTTGATGGCAATTTTGGTGATTTCAGACAAACAATTGGTGATAATACAGGCAAGAATGAATCAGCTCCAATGTCTGTAGATTTTTCTATCTTTGGATTAAAACCTCCAAATAGACCTACAATTAACAGTGCTGACAGATCACATTTAAAAAGAAAATTAGATCTAGAATTCCAACAGCCAGAATGA 1254 0.4131 MAELDPSKKVADRYLKREVLGEGTYGVVYKAIDTHTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADTKSYLQMTLKGLAFCHKRWVLHRDMKPNNLLIGPNGQLKLADFGLARMFGSPDRRFTHQVFARWYRAPELLFGAKQYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPSQWPDMVYLPDYVEYQYVPAPPLRSLFPMASEDALDLLSKMFTYDPKSRISVQQALEHSFRYFSSAPLPTDPDKLPRPAPKRESTVSDFNLQEGPTVLSPPRKSRRVMPGRDGFEGNSVQADKVDGNFGDFRQTIGDNTGKNESAPMSVDFSIFGLKPPNRPTINSADRSHLKRKLDLEFQQPE. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g07064 417 MobiDBLite consensus disorder prediction 385 417 - -
Seca11g07064 417 MobiDBLite consensus disorder prediction 300 361 - -
Seca11g07064 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Seca11g07064 417 CDD STKc_CDK7 13 309 IPR037770 GO:0005675|GO:0008353|GO:0070985
Seca11g07064 417 Gene3D Transferase(Phosphotransferase) domain 1 95 312 - -
Seca11g07064 417 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Seca11g07064 417 FunFam Putative cyclin-dependent kinase 7 95 312 - -
Seca11g07064 417 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Seca11g07064 417 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g07064 417 FunFam Cyclin-dependent kinase D-1 5 94 - -
Seca11g07064 417 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g07064 417 Pfam Protein kinase domain 16 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g07064 417 PANTHER CELL DIVISION PROTEIN KINASE 12 302 - -
Seca11g07064 417 MobiDBLite consensus disorder prediction 400 417 - -
Seca11g07064 417 SUPERFAMILY Protein kinase-like (PK-like) 10 293 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g07064 Seca-Chr11 170758951 170763165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g07064 4 413 Core Cell Cycle Gene Families AT1G73690 75.610 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Seca11g07064 Pkinase 9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g07064 K02202 - gmx:100776618 783.482