Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g07043 ATGCCTTTTGTCACAACAGAGGCAACAAAAACAGTAGCAGAACACATCAAATGGAGAAGACCCAGAAACCAATTCAGCCACCACCACCACCACCCCATTTCAGAAACAGATCCAAATCCACCAATCCCTCATCCCATTATCCAATCCACACGGTGCAAGTCCACCATTTCTTCTCTGCTCCTCTCCAATGAAACCAGCACCATCAATGACAATGTCCGGAGCAGGAAAAAAAGCAACTTTTCTGCAGCAAGCTTCAGAGGGTTCGGGTGCACCGCCGGTGCTTCTCAGCAGGTGTCAGTGCCAGCGGTGATTCGCGCCTCCGCGGATTGGCAAGGGAAGAAAGCCAGAAAAAAGAAGCACAAGAGCAACAAGAACAGTAGCAGCAGCAAGGCTTGCCATGGTGGGGTTATAGATGGTTCAGCTACTTGTGTGGATTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCAGCGGATGCTGCTGCCTCTGTTGATTACGTTGTGTCTAGGAAGAATGTGTCTGCAAGGGGTAAAATTGATGTGGACAAGATCACTCACAGTCACAGGGAGGCAGGAAGACCCACAACAAGATTTGCTGCTATCTATGGACAGGCTGCATTAATTGATCTTAAGAATTTGGGATTTTTGCTTGATTTGTGCTTATTTATTTATCCTTCTTCTTCAGCTTTATCATTATTTTGGTTTGAAAAAGCCTTAGTACTAACCAACCCTGCTTTGCTTTATTGTCATAACAAATGTTGGCAGCGACGTTCATCTTCTCTTGGAAGGGGCACTGTCTCGTTTCTGGACACTGATCCTGATCTTCCTGAGATGATAATGCTTCAAGGAAGTATACTTATGGGGGGACGGTTAAATTCACATGACCATTTCAGAGAATGGAGACTTGATGTGGATAACATGTCATATGAGCAATTGCTGGAGCTTGGTGAGAGAATTGGTTATGTGAACACTGGACTGAAAGAAGATGAGATGGGATGTAACATAAGGAAGACCAAGCTCCAAGTTTTGAATGATGCATCAAAGAATCAAGTAGACAAAAAGTGTAGCATTTGTCAGGAGGAGTATGAAGCAGATGATGTGCTGGGGACACTAAACTGTGAACACAGCTATCACTTCCATTGTATACAGCAATGGGTTGCACAGAAAAATTTCTGTCCAGTATGTAAGAAACAAGTTGCCGCTCGACACTGA 1215 0.4453 MPFVTTEATKTVAEHIKWRRPRNQFSHHHHHPISETDPNPPIPHPIIQSTRCKSTISSLLLSNETSTINDNVRSRKKSNFSAASFRGFGCTAGASQQVSVPAVIRASADWQGKKARKKKHKSNKNSSSSKACHGGVIDGSATCVDFQDVWCGPGIGFSADAAASVDYVVSRKNVSARGKIDVDKITHSHREAGRPTTRFAAIYGQAALIDLKNLGFLLDLCLFIYPSSSALSLFWFEKALVLTNPALLYCHNKCWQRRSSSLGRGTVSFLDTDPDLPEMIMLQGSILMGGRLNSHDHFREWRLDVDNMSYEQLLELGERIGYVNTGLKEDEMGCNIRKTKLQVLNDASKNQVDKKCSICQEEYEADDVLGTLNCEHSYHFHCIQQWVAQKNFCPVCKKQVAARH. 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g07043 404 SUPERFAMILY RING/U-box 348 401 - -
Seca11g07043 404 ProSiteProfiles Zinc finger RING-type profile. 356 397 IPR001841 -
Seca11g07043 404 MobiDBLite consensus disorder prediction 108 131 - -
Seca11g07043 404 MobiDBLite consensus disorder prediction 20 44 - -
Seca11g07043 404 Pfam Ring finger domain 355 397 IPR001841 -
Seca11g07043 404 FunFam E3 ubiquitin-protein ligase rnf12-A 323 402 - -
Seca11g07043 404 SMART ring_2 356 396 IPR001841 -
Seca11g07043 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 403 IPR013083 -
Seca11g07043 404 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 30 401 IPR045191 GO:0061630
Seca11g07043 404 MobiDBLite consensus disorder prediction 112 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g07043 Seca-Chr11 170612810 170616976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g07043 12 311 C3H Transcription Factor Family AT1G73760 36.709 6.47e-43 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g07043 - - vum:124831997 462.225