Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g07042 ATGGGGAAGAAGAAGAAGAGAGTTTCTTCGAAAGTGTGGTGTTATTACTGCGATCGCGAATTCGACGACGAGAAGATCTTGGTTCAGCATCAGAAAGCGAAGCACTTCAAGTGCCATGTCTGTCACAAGAAGCTATCCACCGCTGGCGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAATCCGTCACCAAGGTGCCCAATGCGAAACCTGGCAGAGAGAGTACAGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATATCTTGGCTGCTCATTATGGAGAAGAAGATGATGACGTTCCATCGAAGGCAGCCAAGGTGGATATCCCAACAACCCAGCTTGTAGGTGGAATGGTGCCACCTCCTTTGGGTACAGGATATCCTCCTCGATCAACCTTGGGAACAATTCCACCAATTTACAATCCTGCTGTACCTGTGCCTCCAAATGCTTGGGCAGTTCCACCTCGACCTCAGCCATGGTTTCCACAACCTCCAGCTGCTTCCATTCCTCCCCCTGTCCCATACGTACAGCAGCCATTATTTCCTGTCCAGACCGTAAGGCCACCATTGCCATCAACTACTACACCTGCACTCCAAACTCAGATTACTCCTCCTGGATTACCTACATCTACACCTTCTGTCCCAGTTTCACAACCTTTATTTCCTGTTGCTGGAAATAACCATACAACGGCTCAAAGTTCTACATTTACAACTGCACCTCTGTCTTCAAGTGTTCCATCGATAACTCCCGCACTGTCTTCAAATGTCCCTTTTGATGCCAATTCTTCTGTGACAAGTAGCTATCAGGCAATAGGGGTTCCAGGTGGGACAGCAAGTAACTCACATTCTTATGCTTCTGGTCCAAATACCGGCGGGCCTTCAATTGGACCTCCCCCAGTAATTGCAAACAAAGCTCCTATTTCTCAGCCTGCCACTAATGAAGTCTACTTGGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCCTTACCAAAATATCAGGTGCATGATGAAAGTAGCCAGATTGCTGCAAACATCCAACTTCGTGATCCTTCCCAGCATTTGTACACCGTAAAAGAATTTTTGCTTATCCGTAGCATCATTACAATTTATTTTATGGAACAAGTGAATTCAGACTTGGCCCAGATGAGCTCCATTGATGCAGCCATAGATAAGAGGATACTTGAAAGCAGGCTAGCTGGTCGTATGGCATTTTAA 1233 0.4663 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGEEDDDVPSKAAKVDIPTTQLVGGMVPPPLGTGYPPRSTLGTIPPIYNPAVPVPPNAWAVPPRPQPWFPQPPAASIPPPVPYVQQPLFPVQTVRPPLPSTTTPALQTQITPPGLPTSTPSVPVSQPLFPVAGNNHTTAQSSTFTTAPLSSSVPSITPALSSNVPFDANSSVTSSYQAIGVPGGTASNSHSYASGPNTGGPSIGPPPVIANKAPISQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESSQIAANIQLRDPSQHLYTVKEFLLIRSIITIYFMEQVNSDLAQMSSIDAAIDKRILESRLAGRMAF. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g07042 410 PANTHER ZINC FINGER PROTEIN 207 1 410 - -
Seca11g07042 410 Gene3D Classic Zinc Finger 1 66 - -
Seca11g07042 410 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Seca11g07042 410 SMART c2h2final6 12 35 IPR013087 -
Seca11g07042 410 SMART c2h2final6 36 59 IPR013087 -
Seca11g07042 410 CDD SUF4-like 13 92 - -
Seca11g07042 410 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Seca11g07042 410 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Seca11g07042 410 MobiDBLite consensus disorder prediction 281 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g07042 Seca-Chr11 170605504 170609220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g07042 1 351 C2H2 Transcription Factor Family AT1G30970 63.014 3.75e-144 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca11g07042 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g07042 - - gmx:100819009 580.482