Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g07040 ATGTATGGCAACCAATATGAAGAAGGCGATATGTCTCTGCTCCATGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATCAAATGATATGTAGGTATCACCAGAAGGCACCAACAAATTGGATAGCAATTACCACGGCATTCCTATTCTTTGTGATTCTTTTATTAGTTGGTTACATTTTATATGGTGCTGGAAATCATATTGTCAAAGTAGAGGATGATTTCCATGAAATGCAGGAATTAAAAGTCCGAGCAGAAGCAGCTGATGTTGCCAAATCGCAGTTTCTAGCTACTGTCTCTCATGAAATTAGAACACCCATGAATGGCATTTTAGGCATGCTTGGTCTCCTTCTACGCACAGAATTGAGTTCAACCCAAAGAGATTATGCTCAGACTGCTCAAGCATGTGGGAAGGCTCTGATAGCATTAATAAATGAGGTGCTAGACCGAGCTAAAATCGAAGCTGGCAAATTAGAGCTGGAAGCAGTTCCATTTGACCTTCGTTCCATACTTGATGATGTCCTTTCTCTTTTTTCTGAGAAGTCTAGACACAAAGGTTTAGAGCTGGCAGTGTTTGTTTCTGATAAAGTTCCAGATATTGTTATGGGAGATCCTGGGAGATTCAGACAAATAGTAACAAATCTTGTTGGTAACTCTGTTAAATTCACTGAGCGAGGACACATATTTGTTAAAGTTCATCTAGCTGAAAATAGAAAGTCCACTATGAATGGAAAGTGTGAGACTTTTCGAAATGGAGGATCTGATGAAGTTGTGCACATATCTAATGGTTATAATTTGAAAACCCTAAGTGGATGTGAAGCAGCTGATGAACGGAATAGCTGGGATAATTTTAAGCATCTAATTGTCGATGAAGAATTTTTCTTTGATGCTTCAATTAAAAAGTCAGCCTCTAGTGAATCTTATGAGCAAGTCACCTTGATGGTCTGTGTGGAGGATACTGGAATTGGAATTCCTTTCTCAGCCCAAGATAGGATTTTTATGCCTTTTGTGCAGGCAGACAGCTCAACCTCTCGAAACTATGGTGGTACCGGCATTGGCTTGAGTATCAGTAAGTGCCTGGTTGAACTAATGGGTGGTCAGATAAATTTCATAAGCAGACCACAGGTTGGGAGCACATTTTCATTTACTGCAGATTTTGGAACTTTTAAGAAGAATCCAATAACTGATGTGAAGAAACTTAATTTGGAAGATCTACCTTCTAGTTTTAGAGGGCTTAAAGCTATTGTAGTGGATGGAAAACCTGTTAGAGCTGCTGTGACTAGATATCATTTGAAGAGACTAGGAATACAAGCTAAAGTTGCAAATAGCATCAACAAGGCTGTATCTTTGTGTGGGAAAAATGGCTCTTTGACCGCAGGATTATATCAGCCTGATATTATTTTTGTTGAGAAGGATTCGTGGGTTTGTGGAGAGGATGGGATCTTCAATTTGTGGCAACTGGACTGGAAACAGAATGGACACATGTTTAAGATGCCTCAAATGATCCTTCTTGCAACCAATATTAGTAAAATTGAATTTGATAAAGCTAAAGCTGCAGGTTTCAGTGATACAGTTATCATGAAGCCACTGAGAGCTAGTATGGTGGCTGCTTGTCTTCAGCAAGTTCTGGGGACGGGGAAGAAGAGGCAGCTTGGGAAAGACATGCCTAATGGTTCCAGTTCAGTAAGAAGCCTTCTTTGTGGCAAGAAAATCTTAGTGGTTGATGACAATATGGTAAACCGGAGGGTTGCTGCAGGTGCATTAAAAAATTTTGGAGCTGATGTGAAGTGCGCTGAAAGTGGCAAAACTGCTCTTGAATTGCTTCAATTGCCCCACAATTTTGATGCTTGCTTCATGGATATCCAAATGCCAGAAATGGACGGGTTTGAAGCCACTCGTCGAATTAGGATGATGGAGAGGAAGGAAAATGAGCAGATGAAGAGTGAATGTGGTGAAGGAAATGGCAGGAAAAGTGAGTTCCACATACCAATATTGGCCATGACAGCTGATGTAATCCATGCTACATATGAGGAGTGCTTGAAATGTGGGATGGATGGATATGTGTCAAAGCCTTTTGAGGAAGAGAATCTGTATCAAGCAGTTGCAAAGTTTTTCAAGGCCAACCCAACCTCAGACTCATGA 2145 0.4042 MYGNQYEEGDMSLLHESKLDFGDPYRKHQMICRYHQKAPTNWIAITTAFLFFVILLLVGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLRTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAENRKSTMNGKCETFRNGGSDEVVHISNGYNLKTLSGCEAADERNSWDNFKHLIVDEEFFFDASIKKSASSESYEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGTFKKNPITDVKKLNLEDLPSSFRGLKAIVVDGKPVRAAVTRYHLKRLGIQAKVANSINKAVSLCGKNGSLTAGLYQPDIIFVEKDSWVCGEDGIFNLWQLDWKQNGHMFKMPQMILLATNISKIEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQLGKDMPNGSSSVRSLLCGKKILVVDDNMVNRRVAAGALKNFGADVKCAESGKTALELLQLPHNFDACFMDIQMPEMDGFEATRRIRMMERKENEQMKSECGEGNGRKSEFHIPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFKANPTSDS. 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g07040 714 FunFam Histidine kinase 4 64 155 - -
Seca11g07040 714 PRINTS Bacterial sensor protein C-terminal signature 373 386 IPR004358 GO:0016310|GO:0016772
Seca11g07040 714 PRINTS Bacterial sensor protein C-terminal signature 332 342 IPR004358 GO:0016310|GO:0016772
Seca11g07040 714 PRINTS Bacterial sensor protein C-terminal signature 314 328 IPR004358 GO:0016310|GO:0016772
Seca11g07040 714 PRINTS Bacterial sensor protein C-terminal signature 349 367 IPR004358 GO:0016310|GO:0016772
Seca11g07040 714 PANTHER TWO-COMPONENT HISTIDINE KINASE 10 703 - -
Seca11g07040 714 SMART REC_2 570 702 IPR001789 GO:0000160
Seca11g07040 714 ProSiteProfiles Response regulatory domain profile. 414 544 IPR001789 GO:0000160
Seca11g07040 714 CDD HATPase_EvgS-ArcB-TorS-like 209 387 - -
Seca11g07040 714 CDD REC_hyHK_CKI1_RcsC-like 572 702 - -
Seca11g07040 714 Gene3D - 66 155 - -
Seca11g07040 714 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 204 387 IPR003594 -
Seca11g07040 714 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 78 158 IPR036097 GO:0000155|GO:0007165
Seca11g07040 714 Gene3D - 156 391 IPR036890 -
Seca11g07040 714 Pfam His Kinase A (phospho-acceptor) domain 92 157 IPR003661 GO:0000155|GO:0007165
Seca11g07040 714 SMART HisKA_10 92 157 IPR003661 GO:0000155|GO:0007165
Seca11g07040 714 FunFam Histidine kinase 3 565 710 - -
Seca11g07040 714 Gene3D CHASE domain 1 38 IPR042240 -
Seca11g07040 714 SMART HKATPase_4 204 389 IPR003594 -
Seca11g07040 714 ProSiteProfiles Response regulatory domain profile. 571 706 IPR001789 GO:0000160
Seca11g07040 714 Gene3D - 565 710 - -
Seca11g07040 714 Gene3D - 408 548 - -
Seca11g07040 714 Pfam Response regulator receiver domain 572 702 IPR001789 GO:0000160
Seca11g07040 714 SUPERFAMILY CheY-like 410 545 IPR011006 -
Seca11g07040 714 ProSiteProfiles Histidine kinase domain profile. 99 389 IPR005467 -
Seca11g07040 714 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 146 384 IPR036890 -
Seca11g07040 714 CDD HisKA 92 153 IPR003661 GO:0000155|GO:0007165
Seca11g07040 714 Coils Coil 142 162 - -
Seca11g07040 714 SUPERFAMILY CheY-like 569 706 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g07040 Seca-Chr11 170566908 170572640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g07040 1 714 Histidine Kinase Gene Family AT2G01830 68.655 0.0 966
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca11g07040 HATPase_c 9e-32 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g07040 K14489 - gmx:100818481 1249.19