Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g07034 ATGATAAAAAAGGAAGAGATAATGGTGAAACCTGAACTGGGTTTTGGAGGTTCTTTCATTTTTGGTATAGTTTTTGTGCTCTCTGTTGTGGTTATTCCATGTAGGTGTCAGGATGCAGAGGTGATGGTCCTTTTGAGGAACATGATCAATGCCCCCATTAGCTTCCAATGGACAGACCCAGATGTTTGTAAATGGAGACATGTTCAATGTGATGCAATGAAACGTGTTACTGATATTCAAATTGGGAACCAGAATCTTCAAGGCTCTCTCCCCAAGGAACTTGAGAAGTTAACAGAGTTGCAACGGTTTGAGTGCCAACACAATGGTCTCACAGGGCCATTCCCTTACCTTTCACAATCCTTAAAGACGATGTTAATCCATGACAACAAGTTCAGCAGCATACCCAATGATTTATTCAAGGGGATGAGTAGTTTGGAAGAATTGAGAATCGATGACAACCCTTTCCCTCAGTGGCAGATTCCTGAGGCTCTCAAGGAATGTGTTTCACTTCAGACTTTCAGTGCTCAGAATGTTGGCTTTGTTGGGACTATCCCAGATTTTTTTGGCAAAAATGGTCCCTTTCCAGGTTTGGCTTTTTTGGCCTTGTCTGGTAATTTTCTTGAAGGAGGGTTACCTGCAAGCCTCTCAGGTAGTTCAATAGAGAACCTTTTGGTGAATGGACAAAATAGCAACTCTAAACTCAATGGTACCCTTGGTGTGTTACAGAACATGACATCTTTGACACAAATTTGGGCTAATGGTAACTCATTTATGGGTCCTATACCTGACTTGTCACACCTTGATAAACTGTCTGATTTGAATTTAAGGGATAACCAGTTAACTGGTGTTGTTCCACCTTCCCTAACGGGTCTTCCAAGTCTGCAGGTTGTGAACTTAACCAACAATAATCTTCAAGGATCCCCTCCCAAGTTCAGAGATGGGGTAGCTGTTGATAATAATATGGATAAGGGGAGAAATCAATTTTGCACAAACATGCCAGGGCAGCCATGTAGTCCTCTTGTGAATGCTTTACTATCTGTTGTTGAACCTTTGGGGTATCCTCTCAAGTTTGCTGAAAGTTGGCAGGGTAATGATCCATGTGCCAATAAATGGACTGGGATAGTTTGCTCTAATGGAAACATTTCAGTTATCAATTTTCAGAACATGGGTCTATCTGGGACTATTTCTCCTAGTTTTGCCAGCCTTACATCTGTCACAAAATTGCTTCTTGCTAACAATGGTCTCATTGGTACCATACCAAGTGAACTCACTAGTATGCCTCTTCTGCAGGAGTTAGATGTTTCCAATAATCATTTATATGGCCATGTCCCATCATTCCGTAAAGATATGGTTCTCAAATTAGGTGGGAATCCTGATATTGGAAAAGATAAACCTTCTTTTTCACCTGGCTCTGGTTATGGTTTTGGTGGCAATTATAATAACGGACTAAGTGCTGGAGCCATTGTTGGGATTGTGGTAGGAGTTGTCATTTTACTTGGTGTTGGGGCTTTAATGTTTATGAAGTTCAGAGGAAAGTTGAAGCATACTAAAAAAGTTCAAAATCCAACAGCAATTGTGGTACATCCTAGGCATGGTGGGGATGGGGATGCTGTGATGATACATGAAGATATGGTAATTTCAATTCAAGTTTTGAGACAAGTTACTGATAATTTTTGTGAGGACAACATAGTGGGGAAGGGGGGTTTTGGCACCGTATACAAAGGAGAATTGCATGATGGGACAAAGATTGCAGTGAAAAGGATGCAAACTGGGGTGGTGGATGAGAAAGGGCTGAGTGAGTTCACTTCTGAAATTGCAGTGCTCACTAAGGTTAGACACAGACATTTGGTTGCATTGTTGGGGTATTGCTTGGATGGAAGTGAGAGACTTCTTGTCTATGAGTATATGCCTCAGGGTGCTTTTAGTAAACATTTGTTCAACTGGAAAGAGGAAGGGATAAAACCACTGGAATGGAAGACAAGGCTTAGTATTGCCTTGGATGTTGCTAGAGGTGTTGAATATCTTCATGGTTTTACAGAACAAATTTTTATCCATAGGGATCTCAAACCTTCCAACATTTTGCTTGGAGATGATATGCATGCTAAAGTATCAGACTTTGGATTGGTTCGCCTTGCTCCTGAAGGAAAAGCCTCATTTCAAACTAGACTTGCTGGAACTTTTGGATATATGGCACCTGAGTATGCAGCCACTGGAAGACTCACAACAAAGGCTGATGTATATAGTTTTGGAGTGATTCTTATGGAAATGATAACTGGAAGGAAAGCACTTGATGAAAGCCAACCAGAAGAGAATGTTCACCTTGTTACATGGTTCCGTAGGATGCTACTGAACAAAGATTCATTTCAAACAATCATAGACCCAACAATTGAAGTTGATGAGGAAACCTATGCCAGTATTAACACTGTTGCTGAGTTAGCTGGGCACTGCAGTGCAAGGGAACCATATCAGAGACCTGACATGAGTCATGTAGTGAGTGTGCTATCACCTCTTGTTGAGGTGTGGAAGCCCACAGAAGCAGATGCTGATGACATATGTGGAATCAATTTGAATATGACATTACCAGAAGCACTACAAAGGTGGCAAGCTTTTGAAGGAAGAAGCACTGTGGACTTCACTTGTTCTCCTTCAACAGTGCATACAATTAGTGAAGACACATCAAACTCCACTCGCCCATCAACAATGATTGCAGGTTCCTTTCCATCTTCAGATGGACGATGA 2739 0.414 MIKKEEIMVKPELGFGGSFIFGIVFVLSVVVIPCRCQDAEVMVLLRNMINAPISFQWTDPDVCKWRHVQCDAMKRVTDIQIGNQNLQGSLPKELEKLTELQRFECQHNGLTGPFPYLSQSLKTMLIHDNKFSSIPNDLFKGMSSLEELRIDDNPFPQWQIPEALKECVSLQTFSAQNVGFVGTIPDFFGKNGPFPGLAFLALSGNFLEGGLPASLSGSSIENLLVNGQNSNSKLNGTLGVLQNMTSLTQIWANGNSFMGPIPDLSHLDKLSDLNLRDNQLTGVVPPSLTGLPSLQVVNLTNNNLQGSPPKFRDGVAVDNNMDKGRNQFCTNMPGQPCSPLVNALLSVVEPLGYPLKFAESWQGNDPCANKWTGIVCSNGNISVINFQNMGLSGTISPSFASLTSVTKLLLANNGLIGTIPSELTSMPLLQELDVSNNHLYGHVPSFRKDMVLKLGGNPDIGKDKPSFSPGSGYGFGGNYNNGLSAGAIVGIVVGVVILLGVGALMFMKFRGKLKHTKKVQNPTAIVVHPRHGGDGDAVMIHEDMVISIQVLRQVTDNFCEDNIVGKGGFGTVYKGELHDGTKIAVKRMQTGVVDEKGLSEFTSEIAVLTKVRHRHLVALLGYCLDGSERLLVYEYMPQGAFSKHLFNWKEEGIKPLEWKTRLSIALDVARGVEYLHGFTEQIFIHRDLKPSNILLGDDMHAKVSDFGLVRLAPEGKASFQTRLAGTFGYMAPEYAATGRLTTKADVYSFGVILMEMITGRKALDESQPEENVHLVTWFRRMLLNKDSFQTIIDPTIEVDEETYASINTVAELAGHCSAREPYQRPDMSHVVSVLSPLVEVWKPTEADADDICGINLNMTLPEALQRWQAFEGRSTVDFTCSPSTVHTISEDTSNSTRPSTMIAGSFPSSDGR. 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g07034 912 SMART LRR_typ_2 267 290 IPR003591 -
Seca11g07034 912 SMART LRR_typ_2 119 141 IPR003591 -
Seca11g07034 912 SMART LRR_typ_2 142 167 IPR003591 -
Seca11g07034 912 SMART LRR_typ_2 426 448 IPR003591 -
Seca11g07034 912 SMART LRR_typ_2 291 313 IPR003591 -
Seca11g07034 912 Gene3D Ribonuclease Inhibitor 340 464 IPR032675 -
Seca11g07034 912 FunFam Receptor-like kinase TMK4 36 334 - -
Seca11g07034 912 ProSitePatterns Serine/Threonine protein kinases active-site signature. 683 695 IPR008271 GO:0004672|GO:0006468
Seca11g07034 912 SUPERFAMILY L domain-like 341 450 - -
Seca11g07034 912 Gene3D Transferase(Phosphotransferase) domain 1 636 852 - -
Seca11g07034 912 SUPERFAMILY Protein kinase-like (PK-like) 538 843 IPR011009 -
Seca11g07034 912 SMART serkin_6 558 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g07034 912 Pfam Protein kinase domain 561 831 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g07034 912 SUPERFAMILY L domain-like 33 311 - -
Seca11g07034 912 PANTHER OSJNBA0070M12.3 PROTEIN 22 912 - -
Seca11g07034 912 Gene3D Phosphorylase Kinase; domain 1 531 635 - -
Seca11g07034 912 FunFam receptor protein kinase TMK1 636 853 - -
Seca11g07034 912 CDD STKc_IRAK 564 837 - -
Seca11g07034 912 FunFam receptor protein kinase TMK1 525 635 - -
Seca11g07034 912 Gene3D Ribonuclease Inhibitor 36 335 IPR032675 -
Seca11g07034 912 ProSiteProfiles Protein kinase domain profile. 558 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g07034 912 MobiDBLite consensus disorder prediction 884 912 - -
Seca11g07034 912 Pfam Leucine rich repeat N-terminal domain 342 377 IPR013210 -
Seca11g07034 912 Pfam Leucine rich repeat N-terminal domain 37 71 IPR013210 -
Seca11g07034 912 FunFam Leucine-rich repeat receptor-like kinase 339 463 - -
Seca11g07034 912 ProSitePatterns Protein kinases ATP-binding region signature. 564 586 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g07034 Seca-Chr11 170525139 170529302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g07034 73 837 Receptor kinase-like Gene Family AT5G65700 32.456 9.27e-87 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Seca11g07034 Pkinase 6.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g07034 - K00924 gmx:100788903 1321.22