Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g07021 ATGGTGTCAAGATCGTATTCAAATCTACTGGAGCTGGCTTCTGGTGAGTCTCCATCATTTGGGCACATGAACAGGCGAATTCCACGGATTATGACTGTGGCTGGGTTGATATCTGATGTTGATGATGACCCTTTGGAGAGTGTGTGCTCTGATCCCTCTTCTTCATCTGTTCAAAGAGACCGCATCATAATAGTGGCAAATCAGCTTCCCATAAGGGCTCAGAGGAAGCAAGATGGTAACAAGAATTGGTTTTTCAGTTGGGATGAGAATTCACTTTTACTCCAACTCAAAGATGGGTTAGGGGATGATGATACTGAGGTTATTTATGTTGGATGCCTTAAGGAAGATGTGCATCCAAATGAACAAGATGAGGTTTCACAGATACTACTTGAGACCTTTAAATGTGTCCCAACATTTCTCCCACCTGATCTATTTACCAGGTACTATCATGGCTTTTGCAAGCAACAGTTGTGGCCACTGTTCCATTACATGTTGCCTCTGTCACCAGACCTTGGTGGCAGGTTCAATAGGTCACTGTGGCAAGCTTATGTCTCAGTTAATAAGATATTTGCAGATAGGATAATGGAAGTGATTAACCCGGAAGATGATTATGTGTGGATACATGATTATCATCTGATGGTGTTACCAACTTTCTTGAGGAAGAGGTTTAACAGAGTGAAACTTGGATTCTTCCTTCATAGCCCATTCCCTTCATCAGAAATATACAAGACATTGCCTATTAGGGAAGAGCTCCTGAGAGCCCTCCTGAATTCAGATTTGATTGGGTTCCACACTTTTGATTATGCAAGGCATTTCCTTTCCTGCTGTAGTAGGATGCTTGGTCTTACCTATGAATCCAAACGAGGTTACATTGGGCTTGAGTATTATGGTAGAACTGTTAGTATAAAAATTCTTCCTGTTGGCATACACATGGGTCAGCTTCAGTCAGTTCTAGGCCTACCAAAGACTGAAGAGAAAGTTTCTGAGCTCATTAGACAGTTTTCTGATCAAGGCAAGACAATGTTACTTGGGGTGGATGACATGGATATCTTTAAGGGAATAAGTTTGAAGCTATTGGCCATGGAGCAGCTCCTTATTCAGCACCCTGAGTGGCAGGGAAAGGTTGTATTGGTTCAGATAGCTAACCCTGCTAGGGGAAGAGGGAAAGATGTGAAGGAAGTGCAAGCTGAGACGAAGGCAACGGTGAAACGGATTAATGAAACATTTGGGAAGCCTGGATATGATCCTGTAATTCTAATTGAGGAGCCACTGAGGTTTTATGAGAAAGTTGCTTATTATGTTGTTGCTGAGTGTTGTTTAGTTACTGCAGTCAGGGATGGAATGAATCTCATACCATATGAATATATAATCAGTCGTCAAGGCAATGAAAAATTGGATAAAGTTTTGGGATTGGCTTACTCCCATAAGAAAAGCACATTGGTTGTCTCTGAGTTCATTGGTTGTTCCCCATCTTTAAGTGGAGCAATCAGAGTGAACCCATGGAATATTGATGCAGTAGCAGATGCAATGGACTCGGCCTTGGAAATGGCTGATTCAGAGAAACAGCTTAGGCATGAGAAGCATTACAGATATGTTAGTACTCATGATGTTGGGTACTGGGCTCGTAGCTTCTTGCAAGATTTGGAAAGGACTTGTAGCGATCATGTGCGGCGAAGGTGGTGGGGAATTGGGTTTGGATTAAGTTTTAGAGTTGTAGCACTTGATCCTAACTTCAGGAAGCTCTCAATGGAGCACATTGTTTCAGCTTACAAGAGAACAACAACAAGGGCTATTCTTCTAGATTATGATGGTACACTGATGCCTCAGGCTTCCATTGATAAAGGCCCAACCAGTAATTCGATTAAAATGCTTAATAATTTGTGTAGAGATAAGAACAACATGGTGTTTCTTGTTAGTGCTAAAAGTCGAAAGACACTTACTGAATGGCTTTCTCCTTGTGAAAATCTGGGACTTGCTGCTGAGCATGGTTACTTCTTAAGACTGAAGCGGGATGCGGAATGGGAAACATGTGGACCTGCAACAGACTGCAGTTGGAAACAAATTGCAGAACCTGTAATGAACCTTTATACTGAAACAACTGATGGATCCACCATTGAAGATAAGGAGACAGCACTTGTTTGGTGCTATGAGGATGCAGATCCAGATTTTGGATCATGTCAAGCTAAAGAACTTCTTAATCATCTTGAAAGTGTGCTTGCAAATGAACCAGTAACAGTCAAGAGTGGCCAGAACAATGTGGAGGTTAAACCACAGGGTGTGAGCAAGGGGCTTGTGGCCAAACGCCTACTTTCCACCATGCAAGAAAAGGGAATGTCACCTGATTTTGTTTTGTGCATAGGAGATGACCGATCTGATGAAGACATGTTTGAGGTAATCACTAGTTCCATGGATGGTCCTTCCATGGCACCCAGGGCTGAAGTATTTGCATGCACTGTTGGTCGAAAGCCTAGTAAGGCCAAGTACTATCTGGATGATACTACTGATATAGTGAGGATGGTGCAGGGTTTAGCCAGTGTTTCAGAACAAACAATTTTATTTTAG 2562 0.4227 MVSRSYSNLLELASGESPSFGHMNRRIPRIMTVAGLISDVDDDPLESVCSDPSSSSVQRDRIIIVANQLPIRAQRKQDGNKNWFFSWDENSLLLQLKDGLGDDDTEVIYVGCLKEDVHPNEQDEVSQILLETFKCVPTFLPPDLFTRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDYVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLGLPKTEEKVSELIRQFSDQGKTMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWQGKVVLVQIANPARGRGKDVKEVQAETKATVKRINETFGKPGYDPVILIEEPLRFYEKVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKVLGLAYSHKKSTLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALEMADSEKQLRHEKHYRYVSTHDVGYWARSFLQDLERTCSDHVRRRWWGIGFGLSFRVVALDPNFRKLSMEHIVSAYKRTTTRAILLDYDGTLMPQASIDKGPTSNSIKMLNNLCRDKNNMVFLVSAKSRKTLTEWLSPCENLGLAAEHGYFLRLKRDAEWETCGPATDCSWKQIAEPVMNLYTETTDGSTIEDKETALVWCYEDADPDFGSCQAKELLNHLESVLANEPVTVKSGQNNVEVKPQGVSKGLVAKRLLSTMQEKGMSPDFVLCIGDDRSDEDMFEVITSSMDGPSMAPRAEVFACTVGRKPSKAKYYLDDTTDIVRMVQGLASVSEQTILF. 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g07021 853 CDD GT20_TPS 61 549 IPR001830 GO:0003824|GO:0005992
Seca11g07021 853 Gene3D Glycogen Phosphorylase B; 325 534 - -
Seca11g07021 853 NCBIfam HAD-IIB family hydrolase 598 799 IPR006379 -
Seca11g07021 853 SUPERFAMILY HAD-like 596 843 IPR036412 -
Seca11g07021 853 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 844 IPR001830 GO:0003824|GO:0005992
Seca11g07021 853 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 595 712 - -
Seca11g07021 853 NCBIfam trehalose-phosphatase 595 843 IPR003337 GO:0003824|GO:0005992
Seca11g07021 853 Pfam Trehalose-phosphatase 599 833 IPR003337 GO:0003824|GO:0005992
Seca11g07021 853 Gene3D - 725 851 IPR023214 -
Seca11g07021 853 Gene3D - 595 724 IPR023214 -
Seca11g07021 853 Pfam Glycosyltransferase family 20 61 549 IPR001830 GO:0003824|GO:0005992
Seca11g07021 853 FunFam Trehalose-6-phosphate synthase 10 726 852 - -
Seca11g07021 853 FunFam Alpha,alpha-trehalose-phosphate synthase 317 533 - -
Seca11g07021 853 Gene3D Glycogen Phosphorylase B; 51 324 - -
Seca11g07021 853 CDD HAD_TPP 597 838 - -
Seca11g07021 853 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 552 - -
Seca11g07021 853 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g07021 Seca-Chr11 170405936 170409461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g07021 1 849 Trehalose Biosynthesis Gene Families AT1G68020 82.155 0.0 1487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g07021 K16055 - jre:109004002 1555.04