Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g07013 ATGGCCAATTTACAAATCACCACCGAGAATGTGGTTCCTGATCAATTCCCGGCTGGTCTCAGTGTTCTTGCGGTTGATAATGACAACACTATTCTTAAACTCATTGAGCAATTATGTATTCGATTCAATTATCAAGTTACCACATGCTCTGAGGTTCAAGTTGCCATGAATCTTTTGAGGGAAAGAAAGGGTTCTTTTGATGTGATACTAATTGATGTTCACATGCCAGACATGGATGCCTATGAATTCCTTCAGCATGTTACCCAAGAATTGAATCTTCCTGTTATTATGATGTCTGTTGATGCATCAGCAAGTGATGTCATGAAGGCAATTAGATATGGAGCTTGTGATTATTGGATTAAGCCTTTGCAGGAGCAACAGTTCAAGAATATGTGGCAGCATTATGTAAGGAATGCCTTGAAACAAAATAATCAAGGACACAAATTTAGCAACTTAGAAGATGCAGATGATGATGAGAAAAAACAGAGGAAAGCTGATTCTGAATTTGCTTCTCATGTTGTTGATGCAACTGAAGCAATTTTTAATTCCCCACAAGAGGGCACTTCAAAAGAAGCTGATGCTTATGAATCGGATAATCTTTATCAACGCGCAACAAAGAAGCCCCGTATAGTATGGACAAAAGAACTGCATCAACGATTTGTCAGGGCTGTGATGCAGTTGGGAATTGATAAGGCTGTGCCAAAGAAAATTCTTCAAGTGATGAATGTTCCTGGTTTGACAAGAGAGAATGTTGCTAGTCATTTGCAGAAATTTAGACTTTACATGAGGAAAATTGTCCCTGGGATTATAAACCCCAAGTTTGGTGCATATGGAGGATTTGACTTTGAAGCACTGGCTGGCCTCAGAGACAACTCAATTTCAAAAGAAGACCAAAGTGCCCTATTGATGTCATCCTTGGAGTGGCCCCCAAACTCTTCCCATGCTATGAACATTGCCAAGAATTTTCCTCCATCAAGATATGGAACATGGCCTCCATCTAATGCAATTGGTTCAGTTGGAGTCAATAATAATAATAATGTGCTGATGAATGCATTATTAATGCAGCAACAGCAACAGCAATGGCAGGAATTAGCGATGAAACAGGATCAAATTCATTCAATGAATGTTCAACCATCTTACACCACAGGTAGAGGCATTTTCTTAGGAAATGCTCCTCCAACCTCCATTTCTCATCCAATATTCTCTTGTTCAATAACTCCACAGCTTCCAAACTCAACTTTCACAATTGCTTTGAGATCTTCTCCTGTGTCACATACACAAGTTCCCTATGGTGATTCACCATCCATCCCAAGTGGGTCTGCTGAACTTGAAATGGAATCATCTTTGATTGGAAAATTGTCCACGGATAAGGAGAAGGAGTTAAAATCTATTAGTCCACAAGAGGATCATGACCCATTCTCATGA 1425 0.3958 MANLQITTENVVPDQFPAGLSVLAVDNDNTILKLIEQLCIRFNYQVTTCSEVQVAMNLLRERKGSFDVILIDVHMPDMDAYEFLQHVTQELNLPVIMMSVDASASDVMKAIRYGACDYWIKPLQEQQFKNMWQHYVRNALKQNNQGHKFSNLEDADDDEKKQRKADSEFASHVVDATEAIFNSPQEGTSKEADAYESDNLYQRATKKPRIVWTKELHQRFVRAVMQLGIDKAVPKKILQVMNVPGLTRENVASHLQKFRLYMRKIVPGIINPKFGAYGGFDFEALAGLRDNSISKEDQSALLMSSLEWPPNSSHAMNIAKNFPPSRYGTWPPSNAIGSVGVNNNNNVLMNALLMQQQQQQWQELAMKQDQIHSMNVQPSYTTGRGIFLGNAPPTSISHPIFSCSITPQLPNSTFTIALRSSPVSHTQVPYGDSPSIPSGSAELEMESSLIGKLSTDKEKELKSISPQEDHDPFS. 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g07013 474 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 266 IPR017930 -
Seca11g07013 474 Pfam Response regulator receiver domain 22 130 IPR001789 GO:0000160
Seca11g07013 474 SMART REC_2 20 132 IPR001789 GO:0000160
Seca11g07013 474 SUPERFAMILY Homeodomain-like 205 264 IPR009057 -
Seca11g07013 474 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
Seca11g07013 474 MobiDBLite consensus disorder prediction 146 168 - -
Seca11g07013 474 SUPERFAMILY CheY-like 19 144 IPR011006 -
Seca11g07013 474 MobiDBLite consensus disorder prediction 451 474 - -
Seca11g07013 474 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160
Seca11g07013 474 FunFam Two-component response regulator 203 266 - -
Seca11g07013 474 MobiDBLite consensus disorder prediction 424 474 - -
Seca11g07013 474 Pfam Myb-like DNA-binding domain 212 257 IPR001005 -
Seca11g07013 474 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 353 IPR045279 GO:0009736
Seca11g07013 474 MobiDBLite consensus disorder prediction 150 168 - -
Seca11g07013 474 CDD REC_typeB_ARR-like 22 134 - -
Seca11g07013 474 Gene3D - 20 154 - -
Seca11g07013 474 Gene3D - 203 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g07013 Seca-Chr11 170341139 170343526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g07013 14 271 Response Regulator Gene Family AT2G25180 44.776 4.68e-67 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca11g07013 Response_reg 7.1e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g07013 - K14491 aprc:113871558 334.339