Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g07011 ATGGCGATGGCGAAAGAGAAAGAGGAAGATGAAGAGACGGTTCACAACAGTGGGAAGAGGCTGAAATGCATGAGGAATCAAGTTCAAGTTCGAGTTCAAGCAGAGGATGATGCTGTAGAAGAGGACAGTGAGCTTCCACTCAAGCCAGGACTTTTCTTTTACCCTACCACCCCCACCTCCTTTGTTGTCTCAGATGCTCTTGAACCCGATTACCCCATCATCTATGTCAACAAGGTCTTTGAAATCTCCACTGGTTATCGTGCTGATGAGGCACTTGGTCGGAACTGTCGGTTCTTACAGTATAGGGATCCTCGAGCTCAGAGACGGCACCCATTGGTGGACCCTGTTGTTGTGTCTGAGATTAGAAGATGTCTTGAGGAAGGTATTGAGTTCCAAGGTGAACTTCTGAATTTCAGGAAGGATGGTACTCCTTTAGTGAACAGACTGAGGCTTGCACCAATTCATGATGATGATGGAACCGTGACACACATAATAGGTATCCAACTATTCTCTGAGGCAAATATAGACCTGAACCGCGTCTCATATCCGGTCTTCAGAGAGACTTGTAATCAAGATTATGATACAAGTGGTAAATATTCTCCTAAGAGTGGACAATCATTGTACACTCAACAACACCAAGAGATGTGTGGCATTCTTCAGCTTTCTGATGAAGTCTTGGCTCACAACATTTTGTCACGGTTGACACCAAGGGACGTAGCATCTATTGGGTCTGTTTGCAGGAGGATCCGTCAATTAACAAAAAATGAGCATGTAAGAAAGATGGTATGTCAAAATGCATGGGGCAAAGAAGTGACAGGCACATTGGAGCTGATGACCAAGAAGTTAGGATGGGGTCGTCTGACTCGGGAACTTACTACTCTTGAGGCTGTTTGTTGGAGAAAACTGACAGTTGGAGGTGCAGTGGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAATCGACTTGTATTGTTTGGAGGTGAAGGAGTGGATATGCAACCTATGGATGACACTTTTGTTCTAAATCTTGATGCTAAAAATCCAGAATGGCGGAGGGTTAGTGTGAAATCATCCCCACCTGGAAGATGGGGCCACACACTCTCATGCTTAAATGGTTCTTGGTTGGTGGTTTTTGGTGGATGTGGTAGGCAAGGATTGCTCAATGATGTTTTTGTGCTTGATTTGGATGCTCAACAGCCAACTTGGAGGGAAGTTTGTGGTGGAACTCCGCCCCTTCCTAGATCTTGGCACAGCTCTTGCACAATCGAAGGCTCCAAATTGGTTGTCTCTGGTGGGTGCACAGATGCTGGGGTACTTCTTAGTGACACATATTTACTTGACCTCACAACAGATAATCCAACATGGAGAGAAATTCCAACTTCATGGGCTCCTCCATCTCGGTTGGGGCACTCACTCTCAGTCTATGGAAGAACAAAAATTCTCATGTTTGGTGGACTTGCAAAGAGTGGACACTTGAGATTACGATCAGGTGAGGCTTATACAATTGATTTAGAAGATGAACAACCACAATGGAGGCAACTAGAGTATAGTGCATTCACAGGATCAGCAAGTCAAAATGCTGTTGTTCCTCCTCCTAGACTAGATCATGTTGCAGTTAGCATGCCTTGTGGGAGGATCATTATATTTGGAGGTTCCATTGCAGGTCTTCACTCACCATCTCAGCTATTTCTCTTGGACCCTTCTGAAGATAAACCATCATGGAGGATCCTCAATGTTCCAGGGCAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGAGTGTTGGTATTGGGTGGACATACTGGGGAGGAATGGATACTGAATGAGTTGCATGAGTTATGCTTAGCAAGTCGACAAGACTGTGACATGTGA 1896 0.4531 MAMAKEKEEDEETVHNSGKRLKCMRNQVQVRVQAEDDAVEEDSELPLKPGLFFYPTTPTSFVVSDALEPDYPIIYVNKVFEISTGYRADEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTVTHIIGIQLFSEANIDLNRVSYPVFRETCNQDYDTSGKYSPKSGQSLYTQQHQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDNPTWREIPTSWAPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEQPQWRQLEYSAFTGSASQNAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEDKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDCDM. 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g07011 631 MobiDBLite consensus disorder prediction 1 20 - -
Seca11g07011 631 Pfam Galactose oxidase, central domain 426 477 - -
Seca11g07011 631 Pfam Galactose oxidase, central domain 377 424 - -
Seca11g07011 631 SUPERFAMILY Kelch motif 298 505 IPR015915 GO:0005515
Seca11g07011 631 Pfam PAS domain 67 167 IPR000014 -
Seca11g07011 631 SUPERFAMILY PYP-like sensor domain (PAS domain) 68 168 IPR035965 -
Seca11g07011 631 SMART pac_2 132 173 IPR001610 -
Seca11g07011 631 FunFam Adagio protein 1 50 179 - -
Seca11g07011 631 Gene3D - 518 627 IPR015915 GO:0005515
Seca11g07011 631 Gene3D - 287 517 IPR015915 GO:0005515
Seca11g07011 631 CDD F-box_AtADO-like 217 263 - -
Seca11g07011 631 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 41 625 - -
Seca11g07011 631 Pfam F-box domain 218 255 IPR001810 GO:0005515
Seca11g07011 631 MobiDBLite consensus disorder prediction 1 19 - -
Seca11g07011 631 SUPERFAMILY Galactose oxidase, central domain 427 626 IPR011043 -
Seca11g07011 631 Pfam Kelch motif 536 583 IPR011498 GO:0005515
Seca11g07011 631 Pfam Galactose oxidase, central domain 312 362 - -
Seca11g07011 631 Gene3D PAS domain 54 179 - -
Seca11g07011 631 FunFam Putative LOV domain-containing protein 289 494 - -
Seca11g07011 631 SUPERFAMILY F-box domain 213 286 IPR036047 GO:0005515
Seca11g07011 631 CDD PAS 57 167 IPR000014 -
Seca11g07011 631 Gene3D - 211 262 - -
Seca11g07011 631 NCBIfam PAS domain S-box protein 73 167 IPR000014 -
Seca11g07011 631 FunFam Putative LOV domain-containing protein 495 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g07011 Seca-Chr11 170324677 170328300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g07011 56 169 AGC Kinase Gene Family AT5G58140 43.860 2.10e-21 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g07011 K12116 - gmx:100301889 1205.66