Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g07009 ATGCTCACAAGAAGAAAATTCCTCAACTTGATCTCAACTTTCAGAGTTTCTCAACTAATTTCTCACCAAATCAATGCAGTTCCACACCCATCGCACCTTTCTTCTGAAATTCCGAAAACGGTTAGGGTTTTACTACTATTCTATGGAACGCAAGCCTCCAAACCCCCAGAATACGAGATGCCTTCTGTGACATGGGGTGTCATTCAAGGTCGCAAAGAGAAGCTCGTTTCGCGTGTAATCATCTTCGACTACCTCAAGGGTTTGGGAATCATCCCTGATGAGTTGCAGGACTTGGAGCTTCCTTCCACCGTTGATGTCATGAGGGAGCGCGTCGAGTTTCTTCAAAAATTAGGTTTGACCGTTGACGACATGAACGAGTACCCTTTGATGCTCGGATGCAGTGTGAGAAAGAACATGATTCCTGTGTTGGGGTACTTGGAAAAAATTGGGATTCCAAGGTCCAAGCTTGGCGAGTTTGTTAAGAATTACCCACAAGTTTTGCATGCTAGTATCATTGTTGAGCTTGCTCCTGTTATCAAGTTCCTTAGAGGTCTTGATGTGGAGAAAGGGGATATTGGGTATGTGCTGCAAAAGTATCCTGAACTTCTTGGATTCAAGCTTGAAGGTACTATGAGCACTTCAGTGGCTTATCTTGTTAGTATTGGTGTCAATCCTAGAGATATTGGTCCAATGGTTACACAGTATCCTTATTTATTAGGGATGAGAGTTGGGACTGTGATAAAGCCTCTGATTGATTACTTGCACACTTTGGGGCTGCCAAAGAAGATTTTAGCTAGGATGTTGGAGAAAAGAGCCTATATACTTGGGTATGATCTTGAAGAGACTGTGAAACCAAATGTGGATTGTTTGATCAGTTTTGGTATAAGGAAGGAGTGTTTGCCTTCGGTTATTGCTCAATATCCCCAGATCCTTGGGCTACCTCTTAAGGCTAAATTATCTTCACAGCAATACTTTTTCAGTTTGAAGCTTAAGATTGACCCTGAAGGGTTTGCACGAGTGGTGGAGAAGATGCCACAAGTGGTTAGCCTTCACCAAAATGTGATTATGAAGCCAGTTGAGTTCCTTCTTGGTAGGACAATACCATCACAAGATGTGGCTTCTATGGTGATAAAGTGTCCTCAGTCAGTTGCACTGCGAGTTGAGCTCATGAAGAACAGTTATTTCTTCTTCAAGAGTGAGATGGGGAGACCCATGAAAGAGCTTGTGGAGTTCCCAGAATACTTTACTTATAGTTTGGAATCCAGGATCAAACCCAGATACCAGCGGCTAAAGAGCAAGGGGATAAGGTGTTCATTGAATTGGATGCTAAATTGTAGTGACCAGAGATTTGAAGAGAGATTACAGGGTAATTACATTGAAACTGAAAATATAGGTCCATCATTCTGTCTGGGTGGGAAATTAGAACTGCCAGGGAATGCCATAATGTCAGATGAGGAAGAGGAGAGTGATGATGAAATGCTATACAGACGAACTGTTTCTCTTTAG 1506 0.4243 MLTRRKFLNLISTFRVSQLISHQINAVPHPSHLSSEIPKTVRVLLLFYGTQASKPPEYEMPSVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELQDLELPSTVDVMRERVEFLQKLGLTVDDMNEYPLMLGCSVRKNMIPVLGYLEKIGIPRSKLGEFVKNYPQVLHASIIVELAPVIKFLRGLDVEKGDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYLLGMRVGTVIKPLIDYLHTLGLPKKILARMLEKRAYILGYDLEETVKPNVDCLISFGIRKECLPSVIAQYPQILGLPLKAKLSSQQYFFSLKLKIDPEGFARVVEKMPQVVSLHQNVIMKPVEFLLGRTIPSQDVASMVIKCPQSVALRVELMKNSYFFFKSEMGRPMKELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGNYIETENIGPSFCLGGKLELPGNAIMSDEEEESDDEMLYRRTVSL. 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g07009 501 PANTHER CGI-12 PROTEIN-RELATED 142 274 IPR003690 GO:0003690|GO:0006355
Seca11g07009 501 Pfam mTERF 143 451 IPR003690 GO:0003690|GO:0006355
Seca11g07009 501 Gene3D Transcription termination factor 3, mitochondrial 245 461 IPR038538 -
Seca11g07009 501 Gene3D Transcription termination factor 3, mitochondrial 107 244 IPR038538 -
Seca11g07009 501 FunFam Transcription termination factor mterf4, chloroplastic 107 244 - -
Seca11g07009 501 SMART mt_12 405 436 IPR003690 GO:0003690|GO:0006355
Seca11g07009 501 SMART mt_12 338 368 IPR003690 GO:0003690|GO:0006355
Seca11g07009 501 SMART mt_12 193 224 IPR003690 GO:0003690|GO:0006355
Seca11g07009 501 SMART mt_12 301 333 IPR003690 GO:0003690|GO:0006355
Seca11g07009 501 SMART mt_12 229 260 IPR003690 GO:0003690|GO:0006355
Seca11g07009 501 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Seca11g07009 501 SMART mt_12 373 404 IPR003690 GO:0003690|GO:0006355
Seca11g07009 501 SMART mt_12 157 188 IPR003690 GO:0003690|GO:0006355
Seca11g07009 501 SMART mt_12 121 152 IPR003690 GO:0003690|GO:0006355
Seca11g07009 501 FunFam Transcription termination factor MTERF4, chloroplastic 245 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g07009 Seca-Chr11 170311256 170312761 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca11g07009 mTERF 3.1e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g07009 K15032 - gmx:100809590 849.351