Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06997 ATGAAACTGGGTTTGAAGCTCCTGCAAGAAAGAGCAAAAGTTGGATCATTTTGGTGGCCATACATCAGCAATCTCCCAGAAACTTACAGCGTGCCTATCTTCTTTCCTGGGGAAGACATAAAGAACTTGCAGTATGCTCCTCTTCTTCACCAGGTAAACAAAAGATGCCGGTTTCTTCTTGATTTTGAGCAACAAGTCAAGCATGTTTTAGCCAGTCTTCCACCAGATAAGCATCCTTTTGGTGGCCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTCTCATCTAGAGCATTCCGGTTACATGGTAACAAGAATCCAAATGGGACAAACATGGACATACCCATGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGGAACAAGATACCAGTAGCACAAAGATGCAAGTGAAGGTTGTGGCTGAGACAGCAATCAAAGAAGATGATCCTTTATTACTTTGCTATGGCTGTTTAAGCAATGATCTTTTCCTTCTTGATTACGGATTTGTGATACACTCAAACCCCTATGACTGTATCGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCAAGCATGGCAGCTGGAGTTTCTTCACCTAACTTCTCAGCACCTGCACCCTGGCAGGACTTGATTTTATCTCAGCTAAATCTAGCTGGAGAAGCTCCAGATCTCAAGGTGAGCTTAGGTGGTCAAGAAATAATAGAGGGCCGCTTGTTGGCTGCATTAAGAGTACTCCTTGCAAGTGATATGGAAACTGTAAAAAAGTATGACCTCAGCACGCTCAAGTCTTTCCATGCTGAGGCTCCTCTTGGTGTTGCAAATGATATTAATGTATTTCGTACCCTAATTGCTCTGTGTGTCATTGCACTGGGACACTTTCCCACCAAAATGATGGATGATGAATCACTTTTGAAGCAGGGTGCTTCAGGTTCAACTGAGTTAGCCATTCAGTTCAGAATCCAAAAGAAATCTGTAATTATAGATGTGATGAGAAATCTCACAAGGAGGGTAAAGCTTCTCTCATCAAAGGAAACAGAAACTGCCGAAGGCTAA 1095 0.4237 MKLGLKLLQERAKVGSFWWPYISNLPETYSVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLDFEQQVKHVLASLPPDKHPFGGQEVDASSLGWAMSAVSSRAFRLHGNKNPNGTNMDIPMMLPLIDMCNHSFNPNARIVQEQDTSSTKMQVKVVAETAIKEDDPLLLCYGCLSNDLFLLDYGFVIHSNPYDCIELKYDGALLDAASMAAGVSSPNFSAPAPWQDLILSQLNLAGEAPDLKVSLGGQEIIEGRLLAALRVLLASDMETVKKYDLSTLKSFHAEAPLGVANDINVFRTLIALCVIALGHFPTKMMDDESLLKQGASGSTELAIQFRIQKKSVIIDVMRNLTRRVKLLSSKETETAEG. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06997 364 Pfam SET domain 20 169 IPR001214 GO:0005515
Seca11g06997 364 FunFam SET domain containing protein 205 358 - -
Seca11g06997 364 SUPERFAMILY SET domain 3 187 IPR046341 -
Seca11g06997 364 Gene3D - 220 362 IPR036464 -
Seca11g06997 364 CDD SET_LSMT 1 183 - -
Seca11g06997 364 Gene3D set domain protein methyltransferase, domain 1 1 182 - -
Seca11g06997 364 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 179 358 IPR036464 -
Seca11g06997 364 FunFam Histone-lysine N-methyltransferase setd3 1 182 - -
Seca11g06997 364 Pfam Rubisco LSMT substrate-binding 219 339 IPR015353 -
Seca11g06997 364 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 3 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06997 Seca-Chr11 170203069 170205610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06997 1 163 NAC Transcription Factor Family AT3G56570 25.714 7.97e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca11g06997 SET 3.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06997 - - gmx:100778387 637.876