Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06993 ATGGCAGACGTTGAGGTAGATGCTGCAGCAGCAGGGATTCCGAAGAAGAGAACATTCAAGAAGTTCAGCTTCAGAGGCGTTGATTTGGATGCGCTCCTCGACATGTCCACTGATGAGCTCGTCAAGCTCTTCAGTGCACGTGCTCGCAGAAGGTTCCAGAGAGGTCTCACCAGAAAGCCCATGGCCTTGATTAAGAAGCTCCGCAAAGCGGTAAAAAGGGAAGCACCACCTGGTGAGAAGCCAGAACCAGTCCGCACTCACCTCCGTAACATGATTATTGTACCTGAGATGATTGGTAGCATTATTGGAGTTTACAACGGAAAGACTTTCAATCAGGTTGAAATCAAACCTGAGATGATTGGTCATTACCTTGCTGAGTTTTCAATTTCATACAAGCCTGTCAAGCACGGTAGACCTGGTATTGGTGCTACTCACTCATCCAGGTTCATTCCTCTCAAGTGA 462 0.4762 MADVEVDAAAAGIPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAVKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK. 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06993 153 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 10 153 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca11g06993 153 PRINTS Ribosomal protein S19 family signature 106 118 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca11g06993 153 PRINTS Ribosomal protein S19 family signature 118 133 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca11g06993 153 PRINTS Ribosomal protein S19 family signature 86 105 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca11g06993 153 Pfam Ribosomal protein S19 50 136 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca11g06993 153 Hamap 30S ribosomal protein S19 [rpsS]. 48 142 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca11g06993 153 ProSitePatterns Ribosomal protein S19 signature. 106 130 IPR020934 GO:0003723
Seca11g06993 153 SUPERFAMILY Ribosomal protein S19 56 137 IPR023575 GO:0003735|GO:0005840|GO:0006412
Seca11g06993 153 NCBIfam 30S ribosomal protein S19 19 153 IPR005713 GO:0003735|GO:0006412|GO:0015935
Seca11g06993 153 FunFam 40S ribosomal protein S15 9 153 - -
Seca11g06993 153 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 9 153 IPR002222 GO:0003735|GO:0005840|GO:0006412
Seca11g06993 153 Gene3D 30s Ribosomal Protein S19; Chain A 9 153 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06993 Seca-Chr11 170166036 170167617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06993 1 153 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 88.889 6.29e-93 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06993 K02958 - gmx:100499657 291.582