Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06988 ATGGGCGACATGAAAGATAAGGTAAAGGGGTTCATGAAGAAAGTCAACAACCCCTTCTCCTCTTCATCATCTGGCAAATTCAAGGGCCAAGGAAGAGTTTTGGGATCTTCTTCTTCTTCCTCTTCCTCTGGACCCACCAATTCCATTCCTAACCCTCGCTACACTCCCACCCACAATCCCAATCCCAATTCCAAACCTAGTTCGGCTGCAACCACGAATCTCAGGCCCTTGCCCCAAAAAACGGTCGCTTCGGAGCATAATAGTAAAACCGAAGGGGCTCGCAAACCTGCAGATGGGTTTGACCCTTTTGATTCTTTGGTAACTTCATCCAAGAGATCTCAAAACGGGTATTCAGTGAATGTGTATGAATGCCCCATTTGTAAACAACCATTTAGGTCCGAAGAAGAGGTGTCTGAACATGTGGATAGCTGTTTGAGTAACCCAGTTGAGGGTGATGATGGAAAGGGTGTCTCAGAATTGCCAGGGAGTGAAGTTGAATCTAATAATGAATTGGAGGTTTGTGTTGGTACTTACATTTCAGGGAAGCCATCTGATGGATCCGTTGATGTTGTTCTCAAACTGTTGAGGAATATTTCTAGGGAACCGGAGAATATCAAGTTTAGGAAGATCAGGATGAGTAATCCAAAGATAAAAGAGGCTGTTGGTGAGGTTCCTGGTGGAGTTGAGTTGCTGAGCTTTGTAGGCTTTGAGCTTAGGGAGGAGAATGGGGAGACATGGGCAGTGATGGAGACTCCTACAGAGGAGCAAATAAAATTGATTAAGAAAGTACTAGTGTTACTGGAGTCACAACTGGCACAGGAGCCTTCTAAGAGGGACAATTTGGCATCTACAACTTCTGCTGAGAAAGATGTAAAGGCTGAACCAAAGCAGGTTGACAGACAGGTGAAGGTCTTCTTTGCTGTCCCTGAAAGCGTTGCAGCTAAAATTGAACTACCAGATTCCTTCTATAATCTTTCATCTGAAGAGGTGAGAAGAGAAGCTGAATTAAGGAGAAAAAAGATTGAAGAATCTCAGCTTTTAATCCCCAAGTCACTTAAAGAAAAGCAAGCTAAAGCTGCCAGGAAGAGATACACAAAAACTATTATTAGGATTCAGTTTCCAGACGGAGTTGTACTTCAAGGTGTATTTTATCCATGGGAACCAACTACTGCTCTCTATGAGTTTGTCAGCTCCGCATTAAAAGAACCAGGTTTGGAATTTGAGCTAATGCATCCTGTAGTTGTGCTACGGCGGGTGATCCCTCATTTTCCAAAAGCAGGGGAAAATGCTAAAACAATAGAGGAAGAGGACCTGGTACCTTCTGCTCTAATTAAGTTCAAGCCCCTGGAAACAGATTCTGTGGTTTTCACCGGTCTCAAAAATGAATTGCTTGAAATCAGTGAACCACTTGTAAATAGTTAA 1422 0.4325 MGDMKDKVKGFMKKVNNPFSSSSSGKFKGQGRVLGSSSSSSSSGPTNSIPNPRYTPTHNPNPNSKPSSAATTNLRPLPQKTVASEHNSKTEGARKPADGFDPFDSLVTSSKRSQNGYSVNVYECPICKQPFRSEEEVSEHVDSCLSNPVEGDDGKGVSELPGSEVESNNELEVCVGTYISGKPSDGSVDVVLKLLRNISREPENIKFRKIRMSNPKIKEAVGEVPGGVELLSFVGFELREENGETWAVMETPTEEQIKLIKKVLVLLESQLAQEPSKRDNLASTTSAEKDVKAEPKQVDRQVKVFFAVPESVAAKIELPDSFYNLSSEEVRREAELRRKKIEESQLLIPKSLKEKQAKAARKRYTKTIIRIQFPDGVVLQGVFYPWEPTTALYEFVSSALKEPGLEFELMHPVVVLRRVIPHFPKAGENAKTIEEEDLVPSALIKFKPLETDSVVFTGLKNELLEISEPLVNS. 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06988 473 Gene3D Classic Zinc Finger 118 149 - -
Seca11g06988 473 MobiDBLite consensus disorder prediction 1 106 - -
Seca11g06988 473 CDD UBX_UBXN6 367 447 - -
Seca11g06988 473 SMART PGNneu 186 253 - -
Seca11g06988 473 SUPERFAMILY PUG domain-like 184 269 IPR036339 -
Seca11g06988 473 Gene3D - 356 449 - -
Seca11g06988 473 Pfam UBX domain 363 413 IPR001012 GO:0005515
Seca11g06988 473 MobiDBLite consensus disorder prediction 15 86 - -
Seca11g06988 473 CDD PUB 179 264 - -
Seca11g06988 473 FunFam UBX domain-containing protein 6 356 447 - -
Seca11g06988 473 Gene3D - 180 268 - -
Seca11g06988 473 Pfam PUB domain 186 261 IPR018997 -
Seca11g06988 473 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 472 - -
Seca11g06988 473 SUPERFAMILY Ubiquitin-like 333 446 IPR029071 -
Seca11g06988 473 ProSiteProfiles UBX domain profile. 362 446 IPR001012 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06988 Seca-Chr11 170114969 170119094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06988 1 394 C2H2 Transcription Factor Family AT2G01650 57.353 2.89e-147 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06988 K14011 - gmx:100779271 689.108