Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06974 ATGGACAAGCTCTTATTGAACTGTTGCATTGGATACTTTATTGTTTACTCTCTCTTGTTTGTTGTGCATGGCAAAAAATATTTATCATGCAATCAAACCCCATACCCACGTGTGTGCAAGCATTACATTGGCAGCACAACATTATCAAGCCTTGATGCTCCTTCCTTCCATGACATGGCCCTTAAGGCCAGCATGGACCAAGCCATTGAAGCCCACAAACAAGTCTCCACCATGGAATTGAATAATATTTTCAAGAACAACCATCGAGCCAAGTCAGCATGGGAAGATTGTTTGGAGTTGTATGAGGACACAATTCATCAACTCAACCGCTCAATCAGCTCAAACAATCTAAATGACAAGCTAACTTGGCAAAGTGCATCCATTGCCAACCATCAAACTTGCCACAATGGTTTCATTGACTTCAACCTTTCCTCTCACTTAAACTACTTCCCATCCATGTTAACCAATTTCTCCAAATTGCTTAGCAATTCCTTGTCTCTCAGCAAGACCATGGCTTTGGCTTCATCATCAACAACAACTAAACAAGTTGGTGGTCGAAGGTTGCTGCTTTCAGATGGTTTCCCTAATTGGCTATCTTCTTCCGATAGAAAGCTTCTTCAGACAGCACCAAAAGCTGATATTATGGTGGCTCAAGATGACACTGGGAATTATAAGACAATCTCAGAAGGTGTGGCTGCAGCGGCTAAGCTTAGTGGAAAAGGGAGAGTTGTTATTCACGTAAAAGCAGGTGTTTACAAAGAGAGTATTGACATTAAGAGGTCAATGAAGAACTTGATGATCATTGGAGATGGAATGGGTTCCACTATTGTTACTGGTAATAATAATGCACAAGATGGCTCCACTACGTTTCGTTCGGCCACTTTTGCGGTTATGGGCGACGGATTCATCGCTCGAGACATGACCTTCGAGAACACGGCAGGGCCACAGAAGCACCAAGCGGTGGCTCTCCGTTCAGGCGCGGACCATTCGGTTTTCTACCGTTGCAGCTTCAAAGGTTACCAAGACACGTTATACGTCTACTCCCAACGGCAATTCTACCGTGATTGTGACATCTACGGCACCATTGACTTCATCTTCGGCGATTCCGTTACGGTCCTTCAGAACTGCAACATCTACGTGAGGAAACCGATGAGCAACCAGCAGAACACCGTAACCGCTCAGGGAAGAACGGATCCTAACGAGAACACCGGAATCGTCCTTCATAACTGCCGCGTAACCGCAGCAGGGGACATGAAAGCCGTTGAAGGATCCTTCAAGACGTTTCTAGGGAGGCCATGGCAGAAGTACTCGAGGACGGTGGTGATGAAGAGTAACTTGGATGGGTTGATTCATCCTTTAGGTTGGTCTCCTTGGAGTGGAAGCTTTGCGTTGAGCACACTGTATTACGGTGAGTATATGAACACAGGAGCAGGTGCTAATACTGCAGGGAGGGTGAAATGGGGAGGGTTTCGTGTGATAAAGGATCCTTCGGAGGCAGTGAAATTCTCGGTTGGTAATTTCTTGGCTGGAGACGCTTGGATTCCTGATAGTGGTGTGCCTTTTGACGCTTCTTTGTGA 1578 0.4582 MDKLLLNCCIGYFIVYSLLFVVHGKKYLSCNQTPYPRVCKHYIGSTTLSSLDAPSFHDMALKASMDQAIEAHKQVSTMELNNIFKNNHRAKSAWEDCLELYEDTIHQLNRSISSNNLNDKLTWQSASIANHQTCHNGFIDFNLSSHLNYFPSMLTNFSKLLSNSLSLSKTMALASSSTTTKQVGGRRLLLSDGFPNWLSSSDRKLLQTAPKADIMVAQDDTGNYKTISEGVAAAAKLSGKGRVVIHVKAGVYKESIDIKRSMKNLMIIGDGMGSTIVTGNNNAQDGSTTFRSATFAVMGDGFIARDMTFENTAGPQKHQAVALRSGADHSVFYRCSFKGYQDTLYVYSQRQFYRDCDIYGTIDFIFGDSVTVLQNCNIYVRKPMSNQQNTVTAQGRTDPNENTGIVLHNCRVTAAGDMKAVEGSFKTFLGRPWQKYSRTVVMKSNLDGLIHPLGWSPWSGSFALSTLYYGEYMNTGAGANTAGRVKWGGFRVIKDPSEAVKFSVGNFLAGDAWIPDSGVPFDASL. 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06974 525 CDD PMEI-like_3 28 144 - -
Seca11g06974 525 PANTHER PECTINESTERASE 17 515 - -
Seca11g06974 525 Pfam Pectinesterase 213 511 IPR000070 GO:0030599|GO:0042545
Seca11g06974 525 ProSitePatterns Pectinesterase signature 2. 358 367 IPR033131 -
Seca11g06974 525 ProSitePatterns Pectinesterase signature 1. 239 258 IPR018040 -
Seca11g06974 525 SMART PMEI_2 23 167 IPR006501 GO:0004857
Seca11g06974 525 FunFam Pectinesterase 27 171 - -
Seca11g06974 525 NCBIfam pectinesterase inhibitor domain 29 171 IPR006501 GO:0004857
Seca11g06974 525 Gene3D - 208 525 IPR012334 -
Seca11g06974 525 FunFam Pectinesterase 207 525 - -
Seca11g06974 525 Pfam Plant invertase/pectin methylesterase inhibitor 29 167 IPR006501 GO:0004857
Seca11g06974 525 SUPERFAMILY Pectin lyase-like 208 522 IPR011050 -
Seca11g06974 525 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 172 IPR035513 -
Seca11g06974 525 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 171 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06974 Seca-Chr11 169967266 169969433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06974 3 525 Carbohydrate Esterase AT1G23200 52.252 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06974 - - lja:Lj4g3v3099630.1 844.728