Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06972 ATGTTCAAACTCGCATTTGTTTCTGCTTTGTTTCTATTATCCATCACCAATTCCTCTGGAAGCCACAACACTTCATCCTCAACAATTTGCCCCACTAATCGCTGCACAAATGGACCTGACATCAAATACCCATTTTGGTTATCCCAAGGTACTCCACCTGACCAATATTGTGGTTACTTAGGCCTTGGCCTTATCTGCTCTGACCACAATGGTTACCCAATTTTATCTCTACCTCCTGCCTTATACTACTATGTAAGAGATATAGACTATGAAAACCATAGTCTTAAACTCATTGATGCTGACACTGCAAACCAAACTTGTCCAAGGGCACTTCACAGTGTTCCCCTAGGCAACCTCCCACTTTCTCACTCCCCTTTGAACTTAAACCTTAACTTTCACTACAATTGTAGTCATTACCCTTCTGATGTATCCTCTATTGAGTGTCTGAGGTCTGGAGTACACGAGTCTTTTGTGTTTGAGATGGGGAATGATACTAAAGGTTTTGACTGGTCTCAGAATTGCCAGGAAAACGTTGTGGTGACAGTGATGAAGGATGAGATTACAAGGGATGGGTTGATGAATGAGTTTGCTGGGGCCATGAATGAAGGGTTTGTGCTTGATTGGCAAACAGCTGCCAATTGTGCTGAGTGTGAGGCCAGTGATGGAATTTGTGGCTACAATAACACCAGGAAGGAGTTGCTCTGCTTTTGCAAGGATGGCAGTACAAGAAGCAATAGTTGTGAAGGTATAATAGCTGGAGGAATTGGAGCACTGCTATTGATATGCATCATACTCTGCATTTTTAGACGTAAATTATCACCAATTTTATTAAAAATTTGGAAGACCACAAAGGTTGATCAAGATATTGAGGCCTTCATCAGAAATAACGGACCTCATGCTATAAAAAGATACTCATATTCAGAAATCAAGAAAGTGACCAATTCTCTCGAATCCAAATTGGGACAAGGGGGTTATGGCCAAGTATATAAAGGAAATCTAAACAACAATTGTCCTGTGGCTGTGAAGGTACTTAATGCATCAAAAGGGAATGGGGAAGAATTCATCAATGAGGTTGTGAGCATTAGTAGAACATCCCATGTAAATGTTGTTAATCTCCTTGGTTTTTGTCTTGAAGGTCAGAAGAAAGCTCTTGTCTATGAATTTATGCCTAATGGATCACTTGAGAAGTTTATACAGAACAAGAATGTTGAAACCAATCCACCTTTGAGTTGGGAAAGATTACACCAGATTGCAGAAGGGATAGCTAAAGGACTAGAGTATTTGCATAAGGGATGCAATACTAGGATATTACATTTTGACATAAAACCAAGCAACATACTTTTGGATAAAAATTTCTGCCCCAAAATCTCTGATTTTGGGCTTGCTAAACTCTGTTCTAAAACACACAGCACTATCTCTATGCTTGATGCTAGAGGGACAGTAGGGTATATAGCTCCAGAAGTGTGGAACAGAAACTTTGGAGGAGTGTCACATAAATCTGATGTCTATAGTTATGGAATGTTGATTTTGGAAATGGTAGGAGCAAGGCAAAATATCAATGCTGAAGCAAGTCATTCAAGTGAGACATATTTTCCTCATTGGATATATAAGCATATTGAGATTGAGAGCAATTTAGCATGGCATGGTGGGATGACCATAGAGGAAAATGAAATTTGTAGGAAAATGATTATGGTAGGATTGTGGTGCATACAGACAATTCCATATGATAGGCCTCCAATGAGTAAGGTGGTTGAAATGTTAGAAGGAAGCATGGAACAGTTGCAAATTCCACCAAAGCCATTCATATTTTCCCCTACAAAAACCGAAGTAGTACTCGAATCTTGCACAACTACTAGTTTCATAGGTACTGGACTTGGACTACCTCTTATTGCTGTCATCATATGCCGTAATAAAGCTAAGGTGTGGAAGTTTATAAAAACACAATTAGGCATAACAAAAAGGAATGATCGAGCTATAGAAGCCTTCATTGAAAGTCAAGGTCCTCTAGGCATAAAAAGATACCGTTTCTCTGATGTCAAGAAAATGACTGACTCCTTCAAAGTTAAACTGGGAGAAGGTGGTTATGGTTCTGTATACAAAGGAAAATTACTCAATGGTTGCTCTGTGGCTGTAAAGTTACTAAAAGAATCAAAAGGGAGTGGAGAAGAATTTATCAATGAAGTAGCCAGCATAAGCAAAACATCCCATGTTAATGTTGTCACTCTTCTTGGATTTTGTCTTGAAGGAAGCAGAAAAGCTCTCATCTATGAGTATATGTCCAATGGCTCCCTTGAAAAGTACATTCACAACAAAGCAACTGAAACTAATCCATCCTTGAGTTGGGAGAATTTGTACCAGATTGCAATAGGGATAGCTAGAGGACTTGAGTACTTACATAAGGGATGCAACACTCAAATTTTGCATTTTGACATTAAACCACATAATATCCTTTTGGATGAAACTTATAGGCCAAAGATATCAGATTTTGGGCTTGCTAAGCTCAGCACAAGGGACGAGAGCATTATGTCAATGTCAAATGCTAGAGGGACAGTTGGATATGTAGCTCCTGAAGTGTGCAATAAAAGTTTAGGAGGTGTTTCCCATAAGTCTGATGTGTATAGCTATGGAATGATGCTGTTAGAAATGGTTGGAGGACAGAAGAATGTCAATGTTGAGGCTAGTCGGTCAAGTGAGATATATTTTCCTCAATTGGTGATTTTTAAGAAGCTTGAGCTGGGAACTGATTTGGGAATTGAAGGGGTAATGTCCACAGAGGAAAATGAGAAAGCTAAGAAAATGACTATGGTGGGTTTGTGGTGCATTCAGACAATTCCTTCTCATAGACCTACAATAAGTAGAGTGATTGACATGTTGGAAGGTAGCATGGATTCCTTGGAAATGCCACCAAAACCTGTTATTTATTCTCCTCTTGGACTGGGATCAACAGCAGAATTTTCCCCTGAATCAAAGTTAATGGATAGTGTCTAA 2988 0.3919 MFKLAFVSALFLLSITNSSGSHNTSSSTICPTNRCTNGPDIKYPFWLSQGTPPDQYCGYLGLGLICSDHNGYPILSLPPALYYYVRDIDYENHSLKLIDADTANQTCPRALHSVPLGNLPLSHSPLNLNLNFHYNCSHYPSDVSSIECLRSGVHESFVFEMGNDTKGFDWSQNCQENVVVTVMKDEITRDGLMNEFAGAMNEGFVLDWQTAANCAECEASDGICGYNNTRKELLCFCKDGSTRSNSCEGIIAGGIGALLLICIILCIFRRKLSPILLKIWKTTKVDQDIEAFIRNNGPHAIKRYSYSEIKKVTNSLESKLGQGGYGQVYKGNLNNNCPVAVKVLNASKGNGEEFINEVVSISRTSHVNVVNLLGFCLEGQKKALVYEFMPNGSLEKFIQNKNVETNPPLSWERLHQIAEGIAKGLEYLHKGCNTRILHFDIKPSNILLDKNFCPKISDFGLAKLCSKTHSTISMLDARGTVGYIAPEVWNRNFGGVSHKSDVYSYGMLILEMVGARQNINAEASHSSETYFPHWIYKHIEIESNLAWHGGMTIEENEICRKMIMVGLWCIQTIPYDRPPMSKVVEMLEGSMEQLQIPPKPFIFSPTKTEVVLESCTTTSFIGTGLGLPLIAVIICRNKAKVWKFIKTQLGITKRNDRAIEAFIESQGPLGIKRYRFSDVKKMTDSFKVKLGEGGYGSVYKGKLLNGCSVAVKLLKESKGSGEEFINEVASISKTSHVNVVTLLGFCLEGSRKALIYEYMSNGSLEKYIHNKATETNPSLSWENLYQIAIGIARGLEYLHKGCNTQILHFDIKPHNILLDETYRPKISDFGLAKLSTRDESIMSMSNARGTVGYVAPEVCNKSLGGVSHKSDVYSYGMMLLEMVGGQKNVNVEASRSSEIYFPQLVIFKKLELGTDLGIEGVMSTEENEKAKKMTMVGLWCIQTIPSHRPTISRVIDMLEGSMDSLEMPPKPVIYSPLGLGSTAEFSPESKLMDSV. 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06972 995 SMART serkin_6 684 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06972 995 SMART serkin_6 314 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06972 995 FunFam serine/threonine-protein kinase PBS1-like 653 758 - -
Seca11g06972 995 Pfam Protein kinase domain 687 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06972 995 Gene3D Transferase(Phosphotransferase) domain 1 759 968 - -
Seca11g06972 995 Gene3D Transferase(Phosphotransferase) domain 1 389 597 - -
Seca11g06972 995 SUPERFAMILY Protein kinase-like (PK-like) 666 959 IPR011009 -
Seca11g06972 995 SUPERFAMILY Protein kinase-like (PK-like) 297 588 IPR011009 -
Seca11g06972 995 ProSiteProfiles Protein kinase domain profile. 684 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06972 995 Gene3D Phosphorylase Kinase; domain 1 289 388 - -
Seca11g06972 995 Gene3D Phosphorylase Kinase; domain 1 662 758 - -
Seca11g06972 995 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
Seca11g06972 995 Pfam Wall-associated receptor kinase galacturonan-binding 30 99 IPR025287 GO:0030247
Seca11g06972 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 806 818 IPR008271 GO:0004672|GO:0006468
Seca11g06972 995 FunFam serine/threonine-protein kinase PBS1-like 282 388 - -
Seca11g06972 995 Pfam Protein tyrosine and serine/threonine kinase 316 587 IPR001245 GO:0004672|GO:0006468
Seca11g06972 995 ProSitePatterns Protein kinases ATP-binding region signature. 690 712 IPR017441 GO:0005524
Seca11g06972 995 FunFam PR5-like receptor kinase 759 970 - -
Seca11g06972 995 PANTHER RUST RESISTANCE KINASE LR10-RELATED 284 607 IPR045874 GO:0004672
Seca11g06972 995 FunFam PR5-like receptor kinase 389 599 - -
Seca11g06972 995 ProSiteProfiles Protein kinase domain profile. 314 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06972 995 Pfam Wall-associated receptor kinase C-terminal 156 240 IPR032872 -
Seca11g06972 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06972 Seca-Chr11 169937430 169948765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06972 666 995 Receptor kinase-like Gene Family AT5G38260 54.030 6.38e-110 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca11g06972 Pkinase 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06972 - - gmx:100781977 929.472