Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06968 ATGGTTGAATTGTCTTACAACTCAACTAATCCTCTTCAATTCAGTCAATCAAGTTGTGTAATATGTCTACAAAATTTTGAAGACAATCAAACACTTTATAGTTTACCATGTGGACATACATTTCACAGAAATTGTATGTCCACATATTTGTTAGAAAATGAAATATGTCCGATTTGTAGAGAGAGGATTCTAGCTTAA 198 0.3081 MVELSYNSTNPLQFSQSSCVICLQNFEDNQTLYSLPCGHTFHRNCMSTYLLENEICPICRERILA. 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06968 65 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Seca11g06968 65 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 13 63 - -
Seca11g06968 65 SMART ring_2 19 59 IPR001841 -
Seca11g06968 65 Pfam Ring finger domain 18 60 IPR001841 -
Seca11g06968 65 SUPERFAMILY RING/U-box 14 63 - -
Seca11g06968 65 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 64 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06968 Seca-Chr11 169901016 169901213 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06968 16 63 C3H Transcription Factor Family AT2G18670 48.980 3.13e-13 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06968 - - pvu:PHAVU_010G088800g 65.4698