Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06965 ATGGCGACTCCTTTGGACGGAGGAGGAGGAGTATCGCTGCTTTCGAATTCCATGAGCAAGGTCGATTCCTCATCGGCTCTCAATGGCGGTTTGAAGTGCTCCAAACTGGAGTCGCCAATTTTGATTTTCTTGTTCTTTCACAAGGCGATACGGAATGAGCTTGACGCCATGCACCGATTGGCTATGGCATTCGCCACCGGCAATCGCTCCGATATTCAGCCGCTCTTCGAACGCTACCATTTCCTCAGAGCGATTTATAGGCACCACTCCATTGCTGAAGATGAGGTTATTTTTCCAGCTCTGGATAAACGTGTGAAGAATGTAGCTAAAACATATTCTCTTGAGCACAAGGGTGAAAGCAATCTTTTTGACCATCTCTTTGACCTGTTAAATTCTTCCATCTGTAATGATGAAAGTTTTCCAAGAGAATTAGCATCTTGCACGGGAGCTTTGCGGACATCAATTAGTCAACACATGGAGAAGGAAGAGGAGCAGGTATTTCCTCTGCTTATTGAGAAGTTCTCTCTTGAGGAACAGGCATGTTTAGTTTGGCAGTTTCTTTGCAGTATTCCTGTGAATACGATGGCAGAATTTCTTCCATGGCTTTCAACATCTATATCTCCTGATGAATCTGAGGATTTACGAAATTGCTTAAACAAGATAGTGCCAGAGGAAAAACTTCTTCAGAAGGTTGTTTTCACCTGGATGGAGGGGAGAAGTAGTGTTAGCACAGATGAAAGTGGTTTAGATAATTCTCAGCTTCAATATAATTTCAGCCCATTAAACCATCAGGTTGGGAAAGTAAACTGTGTGCGCGAGTCCACAACAACTGGAAAAAGGAAACATTCTGGATCCATGCTAGATGTTTCTGATGCCACTGGAACACATCCTATAGATGAAATACTGCTCTGGCATAATGCAATAAAAAAAGAGTTAAGTGAGATAGCAGTGGAGACCAGAAAGATACAACACTCAGGAGATTTTACTAATATATCAGCTTTTAATGAAAGATTACAATTCATTGCTGAAGTTTGTATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCAGCAGTAGACGGGGAATTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGGTGTTTGATTGAAAGTATTCAAAGTGAAGGAGCATCATCTAATTCAGAAGTTGAATTTTATGCTAAGTTATGCTCACATGCTGATCATATAATGGACACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCAAGAAAGCACTTTAGCTTTAAAAGGCAATGTGAACTTCTGTATCAAAGCTTATGCACGATGCCACTGAAATTGATTGAGCGTGTCCTGCCATGGTTGGTAGGATCTTTTACGGAAGATGAAGCAAAGATGTTTCTAAGAAACATGCAGTTGGCAGCTCCAGCAGCAGATTCTGCTCTAGTCACACTCTTCTCTGGTTGGGCTTGCAAGGCTCGTAATGAAGGTTTGTGTCTGTCTTCAGGCACATCGGGTTGCTGTCCTGCTCAAAGTCTTTCTGATATTGAAGAAAATATTGATTGGCCATCCTGTGCTTGTGCCTCTGCACCATCTATTAGACATTGCTCAGTACTAGCTGAATCAGATGGGAACAAAAGATCATTCAAGCGAAACATATTGGAGTTACACAAGAATGGAGATGTACCAGAAACTTCAGAGACTGAAAGTATTCAGAAAAATTGTTGTAGTGCTAGGTCTTGTTGTGTGCCAGGTTTAGGAGTAAGCAGTAACAATTTGGGGCTGAGTTCTCTTTCTACAGCCAAGTCCTTACGCTCCTTATCTTTCAGCTCATCTGCCCCATCTCTTAATTCCAGCCTTTTTATATGGGAAACAGAGAGCAGCTCATGTGATATTGGCTCTACACAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGCAAAGACTTGGAGTATCTAGATGTTGAATCTGGAAAGTTGAATGATGGTGATGAGACAATTCTTCGGCAATTTAGTGGAAGATTTCGTCTTTTATGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTTCCAGCATTAGAATCCAAAGAGGCACTTCATAACGTGAGTCATTCATACATGCTGGACCATAAGCAGGAAGAACAATTATTTGAAGATATTTCTTGTGTTCTTTCTGAGTTTTCAGTCCTTCATGACGCCTTGCAGATGACCCATATGTCAGATAATTTATGTGAAAGTAATTTTGGAATTTCTGATGGCAATGGTAGTGAGAATATCAAAAAGTATAATGAACTTGCAACTAAGCTTCAGGGTATGTGCAAATCCATTAGGGTGACCCTGGACCATCATCTTTTCAGGGAAGAATGTGAACTGTGGCCATTGTTTGGGAGACATTTCACTGTAGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACTTCTGCACTTACTCAGGATGAACAGAATAAAATGATGGATACATGGAAGCAAGCAACTAAGAACACTATGTTCAATGAATGGCTTAATGAATGCTGGAAAGAGACTCCAGCATCTATAGCACAAACAAAAACATCAGATCATAGCACTTCTCAAAGAGGTACTGAAAGTCAAGAAAGCTTGGACCACAATGATCAAATGTTCAAGCCAGGTTGGAAAGACATATTCCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGGAAGGTTTATCGTGACTCAACTCTTGATCCAAGGAGAAAGGCATATCTTGTACAGAATCTAATGACAAGTCGTTGGATAGCTGCCCAGCAGAAAATACCTAAAGCTCCATCTGAAGGTTCATCTAATGGGGTAGAGATAGAAGGACACTCACCATCATTTCGAGACCCAGGGAAACATGTATTTGGGTGTGACCACTATAAGAGAAATTGCAAACTTCGAGCTGCATGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGTGAGCGATCACTCGATGGATAGAAAAGCAACATCAGAAATGATGTGTATGCGCTGCCTGAATATACAGCCCATAGGGCCTATATGCATGACACCATCGTGTAACGGACTTTCAATGGCAAAGTACTATTGCAATATATGCAAATTTTTTGACGATGAAAGGAATGTATATCATTGCCCATTTTGCAATTTATGCCGTGTTGGACGAGGGCTTGGGATTGATTATTTCCATTGTATGAAATGCAATTGTTGCCTGGGGATTAAATCAGCATCTCATAAATGTCTGGAGAAAGGTTTAGAAATGAACTGCCCAATTTGCTGTGATGACTTGTTCACATCAAGTGCTCCAGTCAGAGCTCTACCTTGTGGCCATTATATGCATTCTGCTTGCTTTCAGGCATACACTTGTAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCCTTATTGGCTGCTGAGGAGCTTCCTGAAGAGTATAGGGACCGCAATCAGGTGAATACTTTCGTGTCTATTGCATGCTACTTTCGCAACATTCCTTTCAAAATTCAAAAGCTAATATGGATTTTATGA 3660 0.4068 MATPLDGGGGVSLLSNSMSKVDSSSALNGGLKCSKLESPILIFLFFHKAIRNELDAMHRLAMAFATGNRSDIQPLFERYHFLRAIYRHHSIAEDEVIFPALDKRVKNVAKTYSLEHKGESNLFDHLFDLLNSSICNDESFPRELASCTGALRTSISQHMEKEEEQVFPLLIEKFSLEEQACLVWQFLCSIPVNTMAEFLPWLSTSISPDESEDLRNCLNKIVPEEKLLQKVVFTWMEGRSSVSTDESGLDNSQLQYNFSPLNHQVGKVNCVRESTTTGKRKHSGSMLDVSDATGTHPIDEILLWHNAIKKELSEIAVETRKIQHSGDFTNISAFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRCLIESIQSEGASSNSEVEFYAKLCSHADHIMDTIQRHFHNEEVQVLPLARKHFSFKRQCELLYQSLCTMPLKLIERVLPWLVGSFTEDEAKMFLRNMQLAAPAADSALVTLFSGWACKARNEGLCLSSGTSGCCPAQSLSDIEENIDWPSCACASAPSIRHCSVLAESDGNKRSFKRNILELHKNGDVPETSETESIQKNCCSARSCCVPGLGVSSNNLGLSSLSTAKSLRSLSFSSSAPSLNSSLFIWETESSSCDIGSTQRPIDTIFKFHKAIRKDLEYLDVESGKLNDGDETILRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSEFSVLHDALQMTHMSDNLCESNFGISDGNGSENIKKYNELATKLQGMCKSIRVTLDHHLFREECELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKETPASIAQTKTSDHSTSQRGTESQESLDHNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKIPKAPSEGSSNGVEIEGHSPSFRDPGKHVFGCDHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMRCLNIQPIGPICMTPSCNGLSMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSAPVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRNQVNTFVSIACYFRNIPFKIQKLIWIL. 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06965 1219 MobiDBLite consensus disorder prediction 880 905 - -
Seca11g06965 1219 CDD RING-H2_Pirh2-like 1120 1163 - -
Seca11g06965 1219 ProSiteProfiles Zinc finger CHY-type profile. 985 1054 IPR008913 GO:0008270
Seca11g06965 1219 CDD Hr-like 42 168 - -
Seca11g06965 1219 Gene3D nmb1532 protein domain like 641 884 - -
Seca11g06965 1219 SUPERFAMILY RING/U-box 1118 1173 - -
Seca11g06965 1219 ProSiteProfiles Zinc finger RING-type profile. 1121 1163 IPR001841 -
Seca11g06965 1219 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 688 1203 - -
Seca11g06965 1219 MobiDBLite consensus disorder prediction 880 898 - -
Seca11g06965 1219 SMART ring_2 1121 1162 IPR001841 -
Seca11g06965 1219 Pfam Hemerythrin HHE cation binding domain 296 430 IPR012312 -
Seca11g06965 1219 Pfam Hemerythrin HHE cation binding domain 44 170 IPR012312 -
Seca11g06965 1219 Pfam Hemerythrin HHE cation binding domain 645 738 IPR012312 -
Seca11g06965 1219 Gene3D nmb1532 protein domain like 37 187 - -
Seca11g06965 1219 Gene3D nmb1532 protein domain like 299 446 - -
Seca11g06965 1219 SUPERFAMILY Zinc hairpin stack 1058 1114 IPR037275 -
Seca11g06965 1219 SUPERFAMILY CHY zinc finger-like 987 1048 IPR037274 GO:0008270
Seca11g06965 1219 CDD Hr-like 647 807 - -
Seca11g06965 1219 CDD Hr-like 299 428 - -
Seca11g06965 1219 Pfam CHY zinc finger 992 1067 IPR008913 GO:0008270
Seca11g06965 1219 ProSiteProfiles Zinc finger CTCHY-type profile. 1057 1120 IPR017921 -
Seca11g06965 1219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1117 1165 IPR013083 -
Seca11g06965 1219 Pfam Ring finger domain 1120 1162 IPR001841 -
Seca11g06965 1219 FunFam Zinc finger protein-related isoform 1 1116 1165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06965 Seca-Chr11 169844701 169854736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06965 38 1194 C2H2 Transcription Factor Family AT3G18290 67.097 0.0 1593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06965 K16276 - gmx:100801725 2172.9