Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06960 ATGTACACATCAAGGAAGAAAATCCACAAAGATAAGGATGCTGAGCCAACTGAGTTTGAAGAATCAGTTGGACAGGCATTGTTTGATCTGGAAAATACCAACCAGGAGCTTAAAAGTGATTTGAAGGATCTATACATAAATTCAGCAGTACAAATTGATGTTTCTGGGAACCGCAAGGCTGTTGTTATCCATATCCCTTACAGATTAAGGAAAGGTTTCCGGAAGATTCATGTTAGGCTTGTCAGGGAGCTTGAGAAGAAGTTCAGTGGCAAGGATGTTATCTTGATTGCCACCCGAAGGATATTGAGGCCACCAAAGAAAGGTTCTGCTGTGCAACGCCCCCGCACCCGAACCCTTACTGCTGTTCATGAAGCAATGCTGGAGGATGTTGTATTGCCTGCTGAGATTGTTGGGAAGCGTGTGAGGTATAGACTTGATGGATCCAAGATTATGAAGGTCTTCTTGGACCCAAAGGAGCGAAACAACACTGAGTACAAGTTGGAGACCTTTGCTGCAGTGTACAGGAAGCTGTCTGGCAAAGATGTTGTGTTTGAGTATCCCATCACAGAGGCTTAA 576 0.4427 MYTSRKKIHKDKDAEPTEFEESVGQALFDLENTNQELKSDLKDLYINSAVQIDVSGNRKAVVIHIPYRLRKGFRKIHVRLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRTRTLTAVHEAMLEDVVLPAEIVGKRVRYRLDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGKDVVFEYPITEA. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06960 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Seca11g06960 191 PANTHER 40S RIBOSOMAL PROTEIN S7 1 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
Seca11g06960 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
Seca11g06960 191 Coils Coil 27 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06960 Seca-Chr11 169816106 169818426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06960 1 191 Cytoplasmic Ribosomal Protein Gene Family AT3G02560 80.628 1.27e-115 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06960 K02993 - gmx:100499757 367.851