Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06958 ATGGCTGAATTCACAGCAAGTTTGCAAAGTTTTAGGCCCTCATTTCCTTTCTTAGACATTGATGACATGGAACTGATAAACCAATTCAAAGGGGTGAACCCACATGTCCTTGACAACTCAATTTTGAATATGCAGAACTTGATGCCATTCTCCAGTGACAGCTTCTTGGGCTCTTCAGAACCTGAATTTCCAGGAAAGTTGTTGTTGGAAGAAAATTTCCAAGGCCTTTTGCATTTTGTCAATCACAATGCAGCTCCAGTTTCAGTTCCTATTTCTTCAGCAGAAAATGAAGGTAAAAAGAGGAAAGCAACTGATATGCCTGGACCCAGTTCTGCAAATTCAACTCCTGCAGTTTCTGAGAATGGAAGCAAGAAAAAAGATAGTTCTGGCAGAGGCAAAAGAGTAAAAAGGGATGTAACAGAAGAAGACCAAAAACCAAAGGAAGTGGTTCATGTTAGAGCCAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAAAAACTAAGGTGCTTACAGAACATTGTCCCAGGATGTTACAAGACAATGGGTATGGCGATAATGTTAGATGAGATCATAAACTATGTCCAGTCCTTGCAGCAACAAGTGGAGGTAAGTGATGTGATAAAAAGTCTAAAGAAAAAGTAG 675 0.3985 MAEFTASLQSFRPSFPFLDIDDMELINQFKGVNPHVLDNSILNMQNLMPFSSDSFLGSSEPEFPGKLLLEENFQGLLHFVNHNAAPVSVPISSAENEGKKRKATDMPGPSSANSTPAVSENGSKKKDSSGRGKRVKRDVTEEDQKPKEVVHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAIMLDEIINYVQSLQQQVEVSDVIKSLKKK. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06958 224 MobiDBLite consensus disorder prediction 107 123 - -
Seca11g06958 224 SMART finulus 164 214 IPR011598 GO:0046983
Seca11g06958 224 Gene3D - 154 221 IPR036638 GO:0046983
Seca11g06958 224 Coils Coil 218 224 - -
Seca11g06958 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 208 IPR011598 GO:0046983
Seca11g06958 224 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 92 213 IPR024097 GO:0006355
Seca11g06958 224 MobiDBLite consensus disorder prediction 90 164 - -
Seca11g06958 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 214 IPR036638 GO:0046983
Seca11g06958 224 Pfam Helix-loop-helix DNA-binding domain 162 209 IPR011598 GO:0046983
Seca11g06958 224 MobiDBLite consensus disorder prediction 124 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06958 Seca-Chr11 169790349 169791985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06958 37 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 53.061 3.65e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g06958 HLH 0.00019 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06958 - - gmx:100806942 289.656