Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06952 ATGAACCTAGTAATGAATTCCCCTTCTGATAACCAAAGTACAACATCCAGTGAATTGGGCAGCCCGAATACCTTTCTCAATGGAATCAATCAAAATGGGCATTTAATATCCATTCATGGTGAGGTGGAAGCCAAACATCGCTTGCTTTTGGTTCAGTGGTTAACTAGTCTTATTACTTCCTTGAATTTTTCAATAAATGTCACGGATGGTGAGTTAAGGGCATGCTTGAGCAATGGCACAGTTTTGTGCCAGATACTGAACAGGCTGCGACCTGGTTCCGTGACTGTGGTTAGTGAGTCTGATCATTCTCTGCCATCACAATCAGAAAATGTTAGAACGTTTCTGAAAGCTTTGGATGGATTGGGCTTGCCCCGGTTTGAAATATCAGACCTAGAGAAGGGATCTATGAAGCCTGTTGTGGATTGTCTTTTAACACTTAGAGCGAAAAGTTTGCAGAATGCTTTGGGAGATAATGTTTCTGTATCTAGTTCCAACTTTGCAAGCTCTCGTGGGAGTTCACCTTCAAGTTTTCTTTTTTCGCCACCAGCTGGTGTAGACATAAGGAGGGTTTCGTCTGAGTCAAGGTTTCATCGTGCATTGGGTAGCCCTGTTATGACAGAATCTTCAGCTTCATTGATATACCAAGTTGGTCATAAGTTCCATGAGGTGTTTCAAGTGAAACCTGGAAGCTACGCAGATCTTCCTGCTGCAAAAATATCAGAAATGATGAAATCAAACAGTTTAGATAATGCTCCCACACAGTCGCTTCTAAGTGTAATCAATGGTATTCTTGAAGAAAGCGTAGAAAGAAGAAATGGCGAAATACCTCATCGTGTGGCATGCTTGTTGAGAAAGGTTTCACAAGAGATTGAGTGGCGCATATCAACTCAAGCTGAACATATACGAACTCAAAATAATCTTTTTAAGGCTCGGGAAGAAAAATATCAATCGAGAATAAGAGTACTGGAGGCACTTGCATCTGGAACTAAAGAAGAGAGTGAGGTATCACAAATAGTTTTATCTAGTCATATTGTTAGAAATGGATCCATTTTATTCCTTTCAAACTTTTCAAATTGCTACGAACAGGCTGAGAAGATCAAAGAGGAAGAAAAGAAGGAAGATGAAAAAGACATCATTAGGTTGGTGAAAGAGCAGGAGGACAGAAATTCGGAAATTTCATCATTGAAGCAAGAACTGGAAACAACCAAGAAAACATATGAAGTACAATGCTCACAGTTGGAAGAAGCAGCTGAGGGTGCTAAAGCAGAATTGAGACAGAAGTCTCGAGAATATGAGCATCGATTGGAAGAATTGAGAAATAAGGTTGAGGAGATCAAAGAGGAAGAAAAGAAAGCAGATGAAAAAGATGCTATTAGGTTGATGAAAGAGAAGGAGGACAGAAATTTGGAAATTTCAGCATTGAACCAAGAACTGGAAACAACCAAGAAAACATGTGAAGTACAATGCTCACAGTTGGAAGAAGAAGCTAAGGGTGCTAAGGCAGAATTGAGACAGAAATCTCAAGAATATGAGCATCGATTGGAAGAATTAAGAAATAAGGTTAAGGAGGTAAAGGCTTCTTGTGATTCAAAATATCAGAAGTGGAGCATGGAAAAGAACCAATTTCAGACTTCTATAAATTTTCAACTTAGGTCCCTACAGAAATTGAAATTATCATGGGAATCCATTAAGCAAGATGTTATGAAAGAGCAGACGGTTTATGTAGAGGAGTGTAATCGATTAGGTGTAAATCTTAAATCACTTGTACAAGCAGCTGAGAACTACCAAACTGTTCTTGCTGAAAATCGAAAATTGTTCAATGAAGTTCAAGAATTAAAAGGAAATATCAGAGTATATTGTCGAATTAGACCATTTCTTTCTGGAAAAAAGGAAAAACAGTCTATTGTACAGCACATTGGTGAAAATGATCTGGTTGTGGCAAATCCCTCCAAAGAAGGGAAAGATGCTCTTAGATCATTCAAGTTCAATAAGATTTTTGGCCCTGCCTCTACTCAAGTGGAGGTATACTCTGACATTCAATCTTTTGTAAGATCAGTACTGGATGGATATAATGTATGTATGTTTGCTTATGGCCAGACTGGTTCAGGGAAAACTTACACAATGACTGGCCCAAATGGAGCAACAAGTGAGAACCTTGGTGTTAATTATAGAGCTCTAAATGACCTCTTCAAAATTTCCACAAGTAGAGCAGGCTTAGTAGACTATGAGATTGGAGTTCAAATGGTTGAGATATATAATGAGCAAGTGCGTGACTTGTTATCAACTGATGGTTCTCTAAAAAGATATCCTTTTTCAATAACTTTGCACAGCATGTTCCCTGTTAAATCACCTTCAGATGTGGTTAAGTTAATGGACATTGGACTTAAAAATAGAGCCATTGGTGCAACAGCTATGAATGAAAGAAGTAGCCGTTCTCACAGTGTGATCTCAATTCATGTTCGTGGGAGGGACTTGAACTCTGGTACTACTCTTCTTGGTAATCTTCATTTGGTAGATTTGGCAGGAAGTGAAAGGGTAGATCGGTCTGAAGTAACTGGGGATAGGCTTAAGGAAGCACAGCATATAAACAGGTCACTATCTGCCCTTGGAGATGTTATTTTTGCGCTTTCTCAAAAGAGCTCCCATGTACCATATAGAAACAGCAAGCTCACTCAACTTCTGCAAACTTCTCTTGGTGGTCAAGCAAAGACACTCATGTTTGTCCAAATCAACTCAGACGTAACTTCATTTTCTGAAACTCTAAGCACTTTAAAGTTTGCTGAGAGAGTTTCTGGAGTTGAATTAGGAGCTGCACGAAGTAACAAAGAAGGCAAAGATGTCAGAGAATTAATGGAACAGGTGGCTTCTATGAAGAACACTATCTTGAAAAAAGATGAGGAGATTGAGCGGCTTCAATTACTGAATGCTTCAGTTGGTGGTATTAAACAAAACCAAAAACCATTAGCTAGAAGTTATAAGCCCCTTGAAGCTGATACCCAGCAGCCAATGGAGGATCATATACACCGAAATGAAATACCCCATCAATCTGAAATTGTTGGGGGAGATATAGTAAAGAATAATGAAACTTTGGGATTTGCAGATGCAGATCTTCATGAAAGATCAAGTGATAGTGAAAGTGGTCTTGCTCAGGGCATAGAAACTGATGGTTCTTTTGAAGGCACAAAATCATCTGATAAATCTAAAGCAGTACGAAAAAATGTTCCACCGACAAAGAAATTAGCCCGAACCCCATCTACCGCTGCTATAATAAAGGATTCCCTGAAGAAAGCAGTACCAGCAGGGATTAAGAAAAGTGCCAGTATTGGCCAACTTATTAAAGGTTCTAAACGGTGGCAGTAA 3360 0.3908 MNLVMNSPSDNQSTTSSELGSPNTFLNGINQNGHLISIHGEVEAKHRLLLVQWLTSLITSLNFSINVTDGELRACLSNGTVLCQILNRLRPGSVTVVSESDHSLPSQSENVRTFLKALDGLGLPRFEISDLEKGSMKPVVDCLLTLRAKSLQNALGDNVSVSSSNFASSRGSSPSSFLFSPPAGVDIRRVSSESRFHRALGSPVMTESSASLIYQVGHKFHEVFQVKPGSYADLPAAKISEMMKSNSLDNAPTQSLLSVINGILEESVERRNGEIPHRVACLLRKVSQEIEWRISTQAEHIRTQNNLFKAREEKYQSRIRVLEALASGTKEESEVSQIVLSSHIVRNGSILFLSNFSNCYEQAEKIKEEEKKEDEKDIIRLVKEQEDRNSEISSLKQELETTKKTYEVQCSQLEEAAEGAKAELRQKSREYEHRLEELRNKVEEIKEEEKKADEKDAIRLMKEKEDRNLEISALNQELETTKKTCEVQCSQLEEEAKGAKAELRQKSQEYEHRLEELRNKVKEVKASCDSKYQKWSMEKNQFQTSINFQLRSLQKLKLSWESIKQDVMKEQTVYVEECNRLGVNLKSLVQAAENYQTVLAENRKLFNEVQELKGNIRVYCRIRPFLSGKKEKQSIVQHIGENDLVVANPSKEGKDALRSFKFNKIFGPASTQVEVYSDIQSFVRSVLDGYNVCMFAYGQTGSGKTYTMTGPNGATSENLGVNYRALNDLFKISTSRAGLVDYEIGVQMVEIYNEQVRDLLSTDGSLKRYPFSITLHSMFPVKSPSDVVKLMDIGLKNRAIGATAMNERSSRSHSVISIHVRGRDLNSGTTLLGNLHLVDLAGSERVDRSEVTGDRLKEAQHINRSLSALGDVIFALSQKSSHVPYRNSKLTQLLQTSLGGQAKTLMFVQINSDVTSFSETLSTLKFAERVSGVELGAARSNKEGKDVRELMEQVASMKNTILKKDEEIERLQLLNASVGGIKQNQKPLARSYKPLEADTQQPMEDHIHRNEIPHQSEIVGGDIVKNNETLGFADADLHERSSDSESGLAQGIETDGSFEGTKSSDKSKAVRKNVPPTKKLARTPSTAAIIKDSLKKAVPAGIKKSASIGQLIKGSKRWQ. 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06952 1119 SUPERFAMILY Calponin-homology domain, CH-domain 42 147 IPR036872 -
Seca11g06952 1119 Coils Coil 382 458 - -
Seca11g06952 1119 SMART kinesin_4 613 941 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca11g06952 1119 Coils Coil 461 534 - -
Seca11g06952 1119 PRINTS Kinesin heavy chain signature 689 710 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca11g06952 1119 PRINTS Kinesin heavy chain signature 834 852 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca11g06952 1119 PRINTS Kinesin heavy chain signature 803 820 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca11g06952 1119 PRINTS Kinesin heavy chain signature 883 904 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca11g06952 1119 Gene3D - 452 493 - -
Seca11g06952 1119 Gene3D - 373 414 - -
Seca11g06952 1119 ProSiteProfiles Kinesin motor domain profile. 615 933 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca11g06952 1119 Pfam Kinesin motor domain 621 931 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca11g06952 1119 PANTHER KINESIN-LIKE PROTEIN KLP-3 463 1084 IPR027640 GO:0003777|GO:0007018
Seca11g06952 1119 MobiDBLite consensus disorder prediction 1039 1089 - -
Seca11g06952 1119 Coils Coil 947 967 - -
Seca11g06952 1119 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 615 971 IPR027417 -
Seca11g06952 1119 FunFam Kinesin-related protein3 771 975 - -
Seca11g06952 1119 Gene3D - 38 152 IPR036872 -
Seca11g06952 1119 ProSiteProfiles Calponin homology (CH) domain profile. 44 151 IPR001715 GO:0005515
Seca11g06952 1119 Pfam Calponin homology (CH) domain 49 147 IPR001715 GO:0005515
Seca11g06952 1119 Coils Coil 353 373 - -
Seca11g06952 1119 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 557 769 - -
Seca11g06952 1119 Gene3D Kinesin motor domain 556 935 IPR036961 -
Seca11g06952 1119 MobiDBLite consensus disorder prediction 1 23 - -
Seca11g06952 1119 SMART ch_5 46 149 IPR001715 GO:0005515
Seca11g06952 1119 Coils Coil 595 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06952 Seca-Chr11 169725001 169732602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06952 372 967 Calmodulin-binding Proteins AT5G65930 30.912 6.06e-68 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06952 K10406 - aprc:113855795 1431.39