Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06951 ATGATCACAGACATGAAAGGTGCTGCAGGTGCCTTGGGAGGCAAGACAGCAAGAGCTTGTGATAGCTGCCTAAGGAGAAGAGCAAGGTGGTTTTGTGGAGCAGATGATGCTTTCCTCTGCCATGGCTGTGACACTTTGGTTCACTCTGCAAATCAATTAGCCAGCAGACATGAAAGGGTTAGGCTTCAAACTGCATCCTGTAAGGTAACTGCTCACACATGGCACAGTGGATTCACACGCAAAGCAAGAACCCCACGTCACAACAAGCAACACTTGGCACTTCAACAACGTCTCAAAGACCAAGTTCTTTTCAACAACACTAGTATTCTTCCCCTTGTTCCTGAGCTTGGAGTTGAAGAGCCTCTCATAGTGGATGATATTGAAGCTGAGGAGCAGCTTCTATGTCGTGTTCCTGTGTTTGACCCTTTTGATGCAGAGCCTTGCAATATATTGAGGGATGAGAGATTGGACATCACCATAAAAAAAGATGCTGCTGATGAAGAACAAGGAGAAGAAGCTTGTGACTTGGATAGTTTCTCTGAGTTTGATGTGGATCTTGCTGAGTTTGCAGCTAGTGTTGAAAGCCTACTTGGGAGTGGGGTTGATGAGGATAATTTAGGTGAGGTTTTTAATCATAAAGAAGAAAAAAATGAAATAATAGATGCATATGTAGGAGAGGTATCCAAAAGTGCAATGGTGAAAGTTAAGAATGAAGAAGAAGTTGATGCTGATGCTGATACAGTTTGTCATTTGGAGTCAGTTTTTGACATGACAAGTGAAGATGCTTTTCATTGGAATAACATTGAGTCAGTGCTATCACCTGTACAGGAAGAGAAAGAGCCTATGGTGGCTAGTAATAGTGGTAGTGAATTAAGTAATAAAGAGGGAACAAAAAGAGACATATTTTTGAGACTAAACTATGATGAGGTTATTACTGCTTGGGCCAGCCAAGGTTCTCCATGGACAACTGGAAACCCTCCAAATTTCAACTCTGATGATGACTCTTGGCTAATCTGCTTGGGTTCTAGTGGTGCAGATGGGGAAGTAAGAAGCTTAAGGGGGCACCTTGTAGATGGGGGAAGAGAAGCAAGAGTTTCAAGGTACAGAGAGAAGAGAAGAACTCGTTTGTTTGCAAAGAAAATAAGATATGAAGTGAGGAAGTTGAATGCAGAGAAGAGACCTAGAATGAAAGGTCGTTTTGTCAAGAGGACATGCTTTGTTGGAGCCAATGCTTTTCCAAATTACCACTGA 1251 0.4237 MITDMKGAAGALGGKTARACDSCLRRRARWFCGADDAFLCHGCDTLVHSANQLASRHERVRLQTASCKVTAHTWHSGFTRKARTPRHNKQHLALQQRLKDQVLFNNTSILPLVPELGVEEPLIVDDIEAEEQLLCRVPVFDPFDAEPCNILRDERLDITIKKDAADEEQGEEACDLDSFSEFDVDLAEFAASVESLLGSGVDEDNLGEVFNHKEEKNEIIDAYVGEVSKSAMVKVKNEEEVDADADTVCHLESVFDMTSEDAFHWNNIESVLSPVQEEKEPMVASNSGSELSNKEGTKRDIFLRLNYDEVITAWASQGSPWTTGNPPNFNSDDDSWLICLGSSGADGEVRSLRGHLVDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGANAFPNYH. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06951 416 SMART bboxneu5 15 62 IPR000315 GO:0008270
Seca11g06951 416 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 11 404 - -
Seca11g06951 416 CDD Bbox1_BBX-like 19 62 - -
Seca11g06951 416 ProSiteProfiles CCT domain profile. 361 403 IPR010402 GO:0005515
Seca11g06951 416 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Seca11g06951 416 Pfam CCT motif 361 403 IPR010402 GO:0005515
Seca11g06951 416 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06951 Seca-Chr11 169716804 169719132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06951 5 403 C2C2-CO-like Transcription Factor Family AT1G25440 43.721 5.76e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca11g06951 zf-B_box 4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06951 - - gmx:100812563 516.538